MmuEX0014458 @ mm9
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91785327-91803814:-
Coord C1 exon
chr2:91803443-91803814
Coord A exon
chr2:91785983-91786081
Coord C2 exon
chr2:91785327-91785623
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCAGTCTGTATGCCCAACAGCCC
3' ss Score
5.79
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GCGGCCGCGGCTGTCGGCACTTCCTGAAGCGGAGGCTGCTTCCCCGGCACCTGGGAGTGGGGCGCGAGGACGCGCAGCGCAGCGCAGGGCGGGCGGAGCGCGCGCTCGCCATGAGCTTGGCGGGCGGTGCGGAGCCGGCGTGCTGAGCCCCGGCCGCCGGCCCGGCATGGGCGTCTCCCGCGGGCCCGCCGCCGGCCGGGGCTAGGGCCGGATGGAGCCGCGGGACCCCAGCCCCGAGGGCCGGAGCAGCGACTCGGAGTCGGCCTCCGCCTCGTCCAGCGGCTCCGAGCGCGACGCGGGTCCGGAGCCCGACAAGGCGCCGCGGCGCCTGACCAAGCGGCGCTTCCCGGGGCTGCGGCTCTTTGGGCACAG
Seq A exon
CCCCTGGCATGGAGACCTTCTTTAGGAAGCATTTCCAACGAAAGGCACGAGGTCCCGGAGAGAGGCAGCGGCGGTCCAGTGGCGTGGGGCTGCCCACAG
Seq C2 exon
GGCACCTGGCCACTGCTTCCCATGCCCCGCTGCCTGCGTCGAGCCTCCTCCCACCTGCTCCCTGCTGATGTGGAGTGTGGCCATACCCTTTGGGGCCTGCATGGTCACTATCGACGCCTCAGCCAGCGGTGGCCCTCAGGCCAGCACCCTGGTCTTGGGGGCCGAAGCCCAAGAGCCTCGGGCGCTGCAGCATGCCCCATGATACCGGCCCGTGTGCGCCCACTGTCTCGCAGACGCCAGGTAGCTCTAAGGCGGAAGTCAGCTGGACCCCAGCCCTGGAGCACCCTGCTTATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'3-7,'3-6,5-7
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.740 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCAAGCGGCGCTTC
R:
GCTGAGGCGTCGATAGTGAC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: