RnoEX0027572 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80855296-80886612:-
Coord C1 exon
chr3:80885730-80886612
Coord A exon
chr3:80855702-80856446
Coord C2 exon
chr3:80855296-80855404
Length
745 bp
Sequences
Splice sites
3' ss Seq
GCAGTCTGTATGCTCAACAGCCC
3' ss Score
4.71
5' ss Seq
TATGTAGGT
5' ss Score
2.16
Exon sequences
Seq C1 exon
CTCTGGCCGTCCGGGGATCGCCCCGGCAGCGCCCCACGCAGCATCCCGACCCTTCCAAGGACACAGTCTCCCCAGGGCTCCGGAGCATCCCTGCCGGCCTTTCTTAGGCGCGGCGCCCCGCAGCTCCCGGCCCCTGTCGTCTGGGCGCCGCGTCACGACGGACGTGCGGGACCCAGAGCCTCTTTGCTTGGTCCGGGCCCGGTGTCCCTGGCTTGGGCGCGCTCGAGACTGAACTTTGGCGGGTTCTCCAGCAGGCCTCGGGGCACGGAGCCGGGACGCAGAAGGATGGCTGAGGGACCGGGGGGAGGAGGACAGCGCGGGGACAGGGCAGCCAGCGGCCGGGCAGCGGAGGAGGAGGAGGTGGTGCGGCGGCGCTGCCGGCGCGGGGAGGAGGCCGAGGTCTTCCAGCCCAGGCCCGAGGGTCCCCGAAGTGTGGCTTCGGGACCTCTGGTAGAAGAGCGATTCAGCCAGATGCACCTTCGAAAGCAGGTGTCATACAG
Seq A exon
CCCCTGGCATGGAGACCTTCTTTAGGAAGCATTTCCAGCGAAAGGCACCAGGCCCTGGAGAGAGGCAGCGGAGGTCCAGTGGCATGGGGCTGCCCACAGGCAAAGCTCGGCGCCGCTCCCCTGCAGGGCAGGCCTCGTCTTCACTGGCCCAGAGGCGCCGCTCCAGTGCACAGCTCCAGGGCTGTTTTCCCAGCTGCGGGGTGGGCACAAGAGGTGCCAGCCGCAGGCGCTCCAGCACTGCACCCCCTACCTGCAATCCCCGCTTCATGGTGGATGTGGTGCCAACCCTACAGCCTGCCACTGTTGGGGCCCAGCTTCTGGGTGCACCCCTGCTGTTGGCTGGGCTCATGAGCATGAAGGAGGAGGAGGAAGGGGCCCAGGAGGGAGACGAGACAGCTGAGGTATCAAGTGATGCCAAGCCAGGTACCAGGACCACGCCCTTCTCACACCAGGGCTCCTGGCCATTGCTTCCCATGCCTCGCTGCCTGCGCCGAGCCTCCTCATACCTGCTCCCTGCTGATGTGGAGTGTGGCCATACTCTTTGGGGCCTGCATGGCCACTATCGTCGCCTCAGCCAGCGGTGGCCCTCAGGCCAGCACCCTGGTCTTGGAGGCCGAAGCCCAAGAGTCTCGGGCGCTGCAGCAGGTCCCATGATCCCAGCCCGGGTGCGCCCGCTGTCTCGCAGACGCCAGGTAGCTCTAAGGCGGAAGTCAGCTGGACCCCAGCCCTGGAACACCCTGCTTAT
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCCACGCCTGGGGCCCCGTGCGGTGAATCTGAGCGGCAGATCCGGAGTACTGTGGACTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.375 C2=0.743
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000024280fB4105
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCCTCTTTGCTTGGTCC
R:
CCCGACTTGGTGATGGCTTTC
Band lengths:
348-1093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]