MmuEX0014458 @ mm10
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91945366-91948159:-
Coord C1 exon
chr2:91948059-91948159
Coord A exon
chr2:91945826-91945924
Coord C2 exon
chr2:91945366-91945466
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCAGTCTGTATGCCCAACAGCCC
3' ss Score
5.79
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
CCACAGCCGTAGGCACAGGCTTGGCCTTGTGCACCCTGAGCAGCTGAGGAAGCTTGTTGTCCCGGAGCACCCGGCAGCGTGTGGCTTCTCTAGTTGTGCAT
Seq A exon
CCCCTGGCATGGAGACCTTCTTTAGGAAGCATTTCCAACGAAAGGCACGAGGTCCCGGAGAGAGGCAGCGGCGGTCCAGTGGCGTGGGGCTGCCCACAG
Seq C2 exon
GGCACCTGGCCACTGCTTCCCATGCCCCGCTGCCTGCGTCGAGCCTCCTCCCACCTGCTCCCTGCTGATGTGGAGTGTGGCCATACCCTTTGGGGCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'7-16,'7-15,8-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.713 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTGCACCCTGAGCAG
R:
CAAAGGGTATGGCCACACTCC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types