GgaINT0054698 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25816545-25817160:-
Coord C1 exon
chr5:25817049-25817160
Coord A exon
chr5:25816745-25817048
Coord C2 exon
chr5:25816545-25816744
Length
304 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CACTCTGGACTCTTTCACAGGCT
3' ss Score
6.75
Exon sequences
Seq C1 exon
ATACTGTGCAGGCACAATGCCCTGGGGCAACCCTGGAGAGCACCACGACTTCGAGCCGCAGCGCCATGATGATGGCTGCATTGAAGTCATTGGCTTCACCATGACATCCCTG
Seq A exon
GTGAGTTTGTTGGTGCTGGTGGGAGCTCATAACCAGAGGAGTGAACAGTCCTGTTGCCCAGGAGTCAGTCAGCCCCACTGTTTCACAGTTCCTCTCCTGTGCAGTTGCGGTGCTGGCTTGTGTGACATTATCTTTTCCCTCAGATTTAGGCAAGGTGCTGTCATGCACTGGTCTCTGTGGATTCCTTCCCACTGAGATCGTGCCCAAAACCTTCAGAACTCAGTTCACCATCTGGCTGACAGTGGATGTTTTCCCCACCCATCTCTCAGTCTGTGCTCTACTCTCACTCTGGACTCTTTCACAG
Seq C2 exon
GCTGCTTTGCAGGTGGGTGGCCACGGGGAGAGGCTGTGCCAGTGCCGGCAGGTGGTTCTCACCACGTCGAAGGCCATCCCCATGCAGGTAGATGGGGAGCCCTGCAAGCTGGCAGCTTCCTGCATCCACATCTCCCTGCGCAACCAAGCCAACATGGTGCAGAAGACCAAACGGCGCAACTCCATGCCTCTGCTCAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.209
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
NA
C2:
PF0060914=DAGK_acc=PD(20.9=49.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCCTGGAGAGCACCA
R:
TCGTTGAGCAGAGGCATGGAG
Band lengths:
286-590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]