MmuINT0048915 @ mm9
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91777595-91778236:-
Coord C1 exon
chr2:91778125-91778236
Coord A exon
chr2:91777795-91778124
Coord C2 exon
chr2:91777595-91777794
Length
330 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TGAGCATCCTATGCCCACAGGCA
3' ss Score
7.5
Exon sequences
Seq C1 exon
GTACTGTGCAGGCACCATGCCCTGGGGCCACCCCGGGGAGCACCATGACTTCGAGCCCCAGAGGCATGATGATGGCTACCTGGAGGTCATCGGCTTCACCATGACATCCTTG
Seq A exon
GTGAGCGGTCCGCCCTAGTCCTGCGTTGTCTCTACCCTTCCTTTCCCTGGCCAGAGCAGAGTAGCCACCTCTGCTCTTTCCTCTGGTTGAAGGTTCCGTGTCCTCTGTTCTACAGTTGGACAGTGACTCTTGCCCTCCCTCCTTTTGCTGTAGGGGAGGACACTTTTATTCCATCTGACGAGGGAGTCTTTGACACCTTTGCCTTATCCCTCCATTCTGTATTCTGTCTGGGGTTCCCTCTTGTGTTTGTCCCCTCACCAGAGCATCTCTGGAAAGAACAGAGCTTGCCCCGCCCACACCTGACCTGACCTGAGCATCCTATGCCCACAG
Seq C2 exon
GCAGCACTGCAGGTGGGTGGGCACGGCGAGCGATTGACGCAGTGCCGAGAAGTGCTGCTCACCACTGCCAAGGCCATCCCTGTGCAGGTGGACGGTGAGCCCTGCAAGCTTTCAGCATCACGGATTCGAATTGCCCTGCGCAACCAGGCCACTATGGTGCAGAAGGCCAAGCGCCGGAGTACTGCCCCACTGCACAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-Dgkz:NM_138306:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.209
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
NA
C2:
PF0060914=DAGK_acc=PD(20.9=49.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGTGCAGGCACCATGC
R:
GCTGTGCAGTGGGGCAGTA
Band lengths:
310-640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: