GgaINT0054792 @ galGal3
Intron Retention
Gene
ENSGALG00000011389 | TRAF3
Description
NA
Coordinates
chr5:52362895-52368888:+
Coord C1 exon
chr5:52362895-52363062
Coord A exon
chr5:52363063-52368807
Coord C2 exon
chr5:52368808-52368888
Length
5745 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
GTTTGCTTTTTTCTCTATAGAAA
3' ss Score
10.38
Exon sequences
Seq C1 exon
ATGCATTTGAAAACTGATTGTCAGTTTGAAGAGCTTCCGTGTCCTCGTGCTGATTGTAAAGAAAAAATACTGAGAAAAGATTTGCCAGACCACGTAGAGAAGACCTGTAAATACCGAGAGACAACTTGTAAATACTGTAAAAGCCAAGTCCCAATGATTATGTTGCAG
Seq A exon
GTGCAGTATTTTCTTGTATGTAGAACAAGATTCTTTATGTTAATTCGGAGTAGTAATTCTTCCTGTGCTTCTGCCTAGTTGCCAGTAGAGTATTGTCTTCTCAGGTGGTCTTTGTAAGTCAAAACAGAAAATAGACTGGCTTTGTTTTTTTGTTTTGCTTTTTTTCCTCCAGTGGACGCACCAGCTACTGCGCTGTCCGGGAAACATTTTCTCTGTTTTTCTGACATTCAGATGCTATGGTTAAAAATAATAATAATAATAAATTCAAATCCGCTCCTTGATGTTCATATTAAAGTAACTCTTCATTTTGCTTTTCTATTTTGCTTAAATGGATATAATAAATGCAACTCCCATCAACAATTAAATGTTATACTGAAAAAGCATAAGCATAGCAATTGACTAGAGAAATAATGTTGTTTTGTCTACTTCTTTGGTATTCTGTGAGCTGTTGAAGGAAAGAAGACAACAATGTGATAACAAAATGTCTTAGCCTGATAGCAACAGTACATGACAGGCCTAGACAGGCTTCCTGTCTAGGAGTACAGTACATGACAGGCTGTTCTAAGTAGGTTGTCTGATAAGCAGCATATTGTGAGTTGCAAGTACAGTGCAGACACTGAGAACTATACTTACGTTACATGTAGTTATAAGCTGTGTTTGCATAATTTCCCATTTTACTGTATTATGCTGAGTCTCTTACTCCCTTACATTTTAATGGTTACTTTTACTCTATTTACGTAGTTTTTATAGTTTGACCAAGAGTGATCATTCTCACTTGTATTCTTGTGTGTTTTTAAGTAAAGTATTGCCGTCATGAGAAGCCACTTTGCTCTGTGGTGGTATTACAAAAAAGCCTGTGTATCCAAGGGATGGAGTACTTTCCTTGTGAGGACAGGCTGAGAGAGCTGAGGCTGTTCAGCCTGGAGAAAAGAATGTTCTGGGGAGATCTGATAGCAACCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGAGGCACTGGCACAGGTTGCCCAGAGAGGTGGTGGATGCCCCATCCCTGGAGACATTCAAGGTCAGGCTGGACAGGGCTCTGAGCACCTGATGGAGCTGAGGGTGTCCCTGTTCATTGCAGGGAGTGGGACTGGATGGCCTTTGAAGGACACTTCCAACTCAAACGATTCTATGACTCTTACTGAGTTTTGGAAGTACATCTGTCTTCATATTATTTGAGCATATACTTGCAAGGTTTGGTACGTTAATAATTGTGCAGTTACTCAGCATCAGGTGGCAGAGATGTAAAAATGTATATATTTGGAGAAAATTTTTTACATTGTCTATTTTTGCACATACGAAGGTGAAACTGTAGTTAGATTATGAATGCTATTCTCTCAAATTTTTCTTTGGGTTGGGAATTGATAATAGGCAAAAAATGATGTTTAAAAAATATCTTCTTTCTTAGTGGACAGTATCAATCAATATTAGGTATGTATTGTACAGCTGTTTTTCCCTATCTAACCAACATGCTCATGGGTTTCTTGTTGTCAATTTATTTATATAGGGGCAATGCAGTATCTACACGTATGTTTTTGAGAGTCTGAAATCACCCATACCTTTTGAGGAACATAAAACTGTTTAGTTTCAAAAATCTCTCATTTTTGTTTATTTATTGACCTAGATTTTTTAAAGTTCAGATACTAGAGAAATGCTAATGGTTTTACTTCTTATGGTCTGAACGTCATCTCATTGTACTTTAGTAATGAGAATTAGAAGCTTAATGAGACTGAACATTTGAATGATAGGCTCCTTTTGATTTGAGGTTTGTCATCCAGAGGTTGAGTTCATCTCTAGCTTCAGTAGCCTAGAATTTTTTTTATTGTAATAATGACTGAAACAGGCCTCAGTGACTTGAACTGAAAATGGAGATAGAGGGAGCGTACTGAGAAAAAAAAGTATGCAAATGGAAACAAAAATAATTTTACCGGAGTACTTCATAGAATCCCATGACCTGTAGGGTAGGAAGTCCCCATTGTTGAAGGCAGACTCTTTAGTTAACAATGTTAGTTCACCCCCTTTTTCTTTCTTTTTCTTTCTTTTAAGATGGCATTTTTCTAGCCTGCCCTGTTGTTAGGTGACTTAACTTCTTAATTTCTCTTCTTTGAACCACATGTAAAACTTTTCTTGCCACAAAGCTACCTTTTCCTCTAATTTCTGACAAAGCTGCTACATTGTAAAACAAACTAGTAGCTTGAAATCATTCTGACATATGTTTTTCTATGTTCTATTACTTGAAAGTGCTTTTCCTATAAAATTCATAGTTAGATAATAGTGTTATGATTTAGATGTAGAAGGACGATATTTCTTGTTGCCTTGGGTCTTCACTACCGCTCCCTTCCCACCAAGGCAATCTGGGCATCACTTGTTCACTGATCTGAAATATAGCTGAACTGACTGGGACAGCCACTAGGGAAGACATGAGGCCTTGTCACCTTGCTCCTTTGTTGCTACGCTGGAGCCAGATGTGTCCCTGCTTCTTATCATCAGAGTACTGTTGGTCTGAGGAGGTGTTTTCCATCTGTGCTAGCATTGCCTCTGTTCAGGTGGCTGTGTCTTAGTAGGGAGGAACTGAACCTCCTGCTGCACTTTAAGAGGCTATCCGATCTGTCTTGGTAAGAAACTACTTGGACTTTCTTGCTTATCAGAGGGATTGCAGGAAAGACGTGCTCCAGAATGGCATGCTTGATGTGTTTGTTTTTGGTTTTTTTTTAAAGTGAGGTGGAATATGTTCTCAGATACTCACAGATTTGACTGAGATTTGAACCAAGACCTTTCACATCTCTGAACTTTGGTCTCCTCTACTTGATTTTATTTCAAGGATAAACATTGTTACTGGGCAAAAAAAGGCATGCTACGTGCTCTTCCTTTTCTAGCGAGCATATAAATCTAAATCTTTGTTTCCTTTGCTTTTTTTTCCTTAAGTACTAGACACGGAACAGTTTGTTTCAAGTTGAATGGGGCATTTCCTTGACATGAAACAATTATTATTTTCCAGATTTTCATTTTGCTGAGGAAAAACTGAGAAGATATGTAAATTCAATTAGATTAGGCCTGTTTTTTTTCCCTCTGTATGGTGATAGGGTTTGACAGCTATACTAAAGAATCTGTCATCATCTAGGTTCAGATGAAAATGCCTGTCTAGCAGTGTGATAAATTTCAACATATCTTTGAACTTTGGATTTGTAGCAGTGAGACTTGGTATCAGATATTTGGGAATAAAATTTAGAAAAGTATTGGAAGGGTAATATCCTTATGTAGGAAGAAGAGATTATCTGAATGTACAGTGAATGTTTCTGAAGAGCTTTTCCATAAGCTGTGTACTCTTACTGAACAGATATCTGCTGTAGTTCTGTTCGCTGTTAAAGCTGACCATTTTTGTGAGTAATTCTTGGGGGAGAAAACCCAACTTTATTACAGTCACATTGTTTTTGAGTAAAAAAGATAATATAAGATGAAACAAGTGGATTTCCTCTCCATAGGAAAAATAAGAAAATCCTTATTTTTACTTTAGAATTTTAACACATTATCAAAAGTATAAATGGACATTTCAGCATTGCAGTTCTGTAACTCTTTACACAATTGGGATAAACATTGAAAAAAACTGTGTATTTTTGAGTTATTGTAGAATACTTTTCTTTGCAGCTAAGTCCTCTCATTCATTTCAGGGTATGAGTTGATCTGTGGTTTGTTTGCTTTTTTCTCTATAG
Seq C2 exon
AAACATGAAGATACAGACTGCCCGTGTGTCATGGTTTCATGTCCTCATAAATGCAGTGTTAAAACACTCATGAGGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389:ENSGALT00000018576:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.7=96.4)
A:
NA
C2:
PF0217613=zf-TRAF=PD(1.8=3.7),PF0314511=Sina=PU(17.5=40.7),PF041569=IncA=PU(8.8=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]