HsaINT0171695 @ hg38
Intron Retention
Gene
ENSG00000131323 | TRAF3
Description
TNF receptor associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr14:102876358-102886269:+
Coord C1 exon
chr14:102876358-102876525
Coord A exon
chr14:102876526-102886188
Coord C2 exon
chr14:102886189-102886269
Length
9663 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
AGTACTTTCTCTCTCTGTAGAAA
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTGCATTTAAAAAATGATTGCCATTTTGAAGAACTTCCATGTGTGCGTCCTGACTGCAAAGAAAAGGTCTTGAGGAAAGACCTGCGAGACCACGTGGAGAAGGCGTGTAAATACCGGGAAGCCACATGCAGCCACTGCAAGAGTCAGGTTCCGATGATCGCGCTGCAG
Seq A exon
GTGCGGGTCCTCCCATTCCACAGGCCTTCCACTCAATTCCTATATGATACATTCCACAGGCCTTCCGCTCAATTCGTAGATAATCCGTTCCACAGGCCTTCCCTCAACTCATAGATAATCCGTTCCACAGGCCTTCCACTCAGTTCATAGATATTCCGTTCCACAGGCCTTCCGCTCAATTCATAGATAATCCGTTCCACAGGCCTTCCCTCAACTCATAGATAATCCGTTCCACAGGCCTTCCGCTCAGCTCACAGATAATCCGTTCCACAAGCCTTCCGCTCAATTCGTAGATAATCCATTCCACAGGCCTTCCGCTCAGTTCATAGATAATCCGTTCCACAGGACTTCTGCTCAGTTCGTAGATAATCCGTTCCACAGGCCTTCCCTCAACTCATAGATAATCTGTTCCACAGTCCTTCCGCTCAATTCATAGATAATCCGTTCCACAGGCCTTCCCTCAACTCATAGATAATCCATTCCACAGGCCTTCCACTCAATTCATAGATAATCCGTTCCACAGGCCTTAGGCTCAATTCATAGATAATCCGTTCCACAGACCTTGTGCTCGATTCATAGATAATCTGTTCCACAGGCCTTCCCTCAACTCATAGATAATCCGTTCCACAGGCCTTCCGCTCATCTCGTAGATAATCCGTTCCACAGGCCTTCCGCTCAGCTCATAGATAATCCGTTCCACAGGCCCTCCCCCAACTCATAGATAATCCATTCCACAGGCCTTCCGCTCAGCTCATAGATAATCCATTCCACAGGCCTTCCGCTCAGCTCATAGATAATCTGTTCCACAGGCCTTCTGCTCAGTTTGTAGATAATCCATTCCACAGGCCTTCCGCTCAATTCATAGATAATCCGTTCCACAGGCCTTCCGCTCAGCTCATAGATAATCCATTCCACAGGACTTCTGCTTAGCTCATAGATAATCCATTCCACAGGCCTTCCGCTCAACTCATAGATAATCCGTTCCACAGGCCTTCCGCTCAGCTCATAGATAATCCATTCCACAGGACTTCTGCTCAGCTCATAGATAATCCATTCCACAGGCCTTCCGCTCAGCTCATAATCTGTTCCACAGGCCTTCCGCTCAGCTCATAGATAATCCGTTCCACAGGCCTTCCGCTCAGCTCATAGATAATCTGTTCCACAGGCCTTCTGCTCAGCTCATAGGTAATCCCTTCCACAGGCCCTCCCTCAACTCATAGATAATCCATTCCACAGGCCTTCCGCTCAGCTCATAGATAATCCATTCCACAGGCCTTCCGCTCAGCTCATAGGTAATCCCTTCCGCAGGCCCTCCCTCAACTCATAGATAATCCGTTCCACAGGCCTTCCGCTGAGTTCATAAATAATCCATTCCACAGGCCTTCTGCTCAATTAATATATACTTCTTCCACTGTACAGCTTCTTAAAGACTATTCTAATAGGACTAAAGAGAAAAGATAGGAATAAATAGCACTTTTTATCTGACTTTATTTCAGAATTAAGCTTTGTTTTGCCTATTTTGATTTATGTAGTTAACATTTTCCATTGCCTTGATTGACTATCATTTAGTATGTCAAAAAATGAATAGTTATTCAAAAAAGGTAAAATTTTTATCTTGTCCTAGGGAATTGCCTCAAAATGTTGATAGATTGCCTGGTCTTATTACAGCTCTGTGACATAACCATCACTTACAACAGGCTAATTTGTCCTACAGCATTGAAATGCAGCTGTTTATCTTGGAGAGAGACAGCTTCTCATACTTCGGTTACTTTGGCACAGTTTTGCATTGTGTGTTTCTGTGGGGGTGAGTGTGTGAATGTGGGTGAGTGTGTGGGGGTAAGTGTGTGTGGGGGTGAGTGTGAATGTGGGTGAGTGTGTGGGGGTGTGTGAATGTGGGTGTGTGTGTATGGGTGAGTGGGTGAATTAAAGAGGAAAGCAGAGATGTTGGGGGTGGAGGACACACTTAGAAAACAATGCATTTGTTGAACAAACACCTATTGGGTACCTACTGTGCGCCGGGCAGTATTCCAGGAGCTGGGGACTCAGTGGTGAGGCTCCTCTAGTGGGAAAAAATACTAACAAATGTGTAACATCGGGTAGTGATCAGTTCCATGAATAAAAATCAGGTGGCATCAAGGGAAGAGAGGTGATCAGCACTGGCTTGTCTGAGGCAGCCAAGGGACAGTGGGGGAGCATGTGGACCCTAAGCTGGAACTGGCAGGGCTGTGGGGTTCAGGAGCTGTGTGGAACACAGGTCAGATGTGAGGGCAGTGGGGCAGCCAGAGGGTGAGGGGAAAGGCACTGGGCAGCCCAGAACTGGGAGGGTGAGAGGGGCCCCGGGGCAAGGCCTGGTGTTGCTGGGGTGGGGGAAGGTTGTACTGGGGTGTGCCTGAGGGTGGAGCGGTAGGATTGGCCAGCAGGTGGGGTATGAGGTAAAGGTGACTCCCAGTGCTTGTGGAGAACCTAGGTGTCCTGCCGAGGGGGTGCCCAGTGAGTGGAGGGTGATGGGCTTGGGGGAGAATGGGGAGTGGAGCCATGCAGGCTGCAGATGGGGGTGAGTTTGGTGGCTCGCAGGATCATGGGGCTGGAGCGAGTGGAGAGGAGGACAGAGCTCGTGGGGGCCTGGGCACACCCTCAGAGGCTGCCTAGAGGCTGGGGTGGGCTTGGCCATGAAGTGACTGAAGGGAGGCACCAGGGCAGCTCAGCCAGGGCGTGGGCCATCATCCAGTTCCTGGTAGATATTGTGGAATGGTTTGTTTTGTTTGAGAGAGAGTCTCACTCTGTCATCCAGGCCTGGAATGCGGTGACACAATCTCAGCTCACTGCAGCCTCTTTCTCCCAGGTTCAAGTGATCCTCCCACCTCAGGAACCATAGGTGCATGCTACCATGCCTGGCTAATTTTTGTATTTTTTGTAGAGACAGGGTCTTGCCATGTTGCCCAGTCTGGTCTCAAAACTCCTGGGCTTAAGCCATCTGCCCACCTCAGCCTCCCAAAGTGGTGGGATTATAGGCGTGAGCCATCGCACCCAGCCGTGGAGCTCTAATGACCAAAATTTAGGGAGAGTTTCTTTTGCTTTTTTCTCTATGAAATGAGTTGTAGTCCTCTTAGGTTGGTGCAAAAGTAATTGCGTTTTTTGCCATTAAAAGTAATGGCAAAAACGGCAATTACTTTTGCACCAACTAAATACTTTATAATCTCTGAATTTGCCTTGCTTTCTGTAATTTTCCTGTGTCCATGTCTTTCTTCCATTGTGAAATCTTTTTCTTGTGTGGTACTTCAGATGTTTCCAGTTATTAAGAACTCTTGAGGCTGGGTGTGGTAGCTCACACCTGTGTGCCCAGCACTTTGGGAGGCTGAAACAGGAGGATCACTTGAGCTTTGGAATTGGAGACCAGCATGGGCAACATAGCAAGACTCTGCCTCTACGAAAAATAAAAATTTAGCCGGGTGTGCTGAAGCATACCTGTAGTTCTAGCTACTAGGGAGGCCAAGGTAGGAAGATTACTTGAGCCAGGGAGTTTGAGACTGGTAGTGAGCCATAATTGCACCACTGCACTCAGCCTGGGTGACAGAGTGAGACCCTGTCTCAAAAAAAAGAACTTTTAAGAACTGTGCCCTCCCCTTTGGAAAATAGCAGTAGTGTTTTTTTGGAGTCAAGTAATTCCTCCAGGCTGTGCATAATGGCTCATGCCTATAATCCCAGAACTCTGGAAGGCCAAAGCAGGAGGATTGCTTGAGGCCAGGAGTTCAAAACCAGCCTGGGCAACAAAGTGAGACCCCATCTCTAGAACGAAAATAATAATTTCTCCAGTTGTTAAATTTCAGTGAATGAGACACATGCCTAATTAACAAGACTTCAGGCTTTACATATGTTAATATGTTGCCATCTCATGCCAGTCAGAATGGCGATTATTAAAAAGTCAAAAAACAACAGATGCTGGCAAGGTTGCAGAGAAAAAGGAATGCTTTTACACTGTTGGTGGGAGTGTAAATTAGTTCAACCATTGTGGAAGACAGTGTGACGATTCCTCAAAGATCTAGAGGCAGAAATAACATTTGACCAAGCAGTCCTATTACTGGGTATATACCCAAAGGAATATAAATCATTCTATTATAAGGATACATGCACATGTATGTTCATTGAAGCAGTATTGACAATAGCAAAGACATGGAATCAACCTAAATGCCCATCAGTGATAGACTGGATAAAGAAAATGTGGTACATCTATACCATGGAATACTGTGTATCCATAAAAAGGAAGGAGATTGGCTGGGCGCCGTGGCTTACGCCTATAATCGCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTTGGAAGTTCGAGACCAGCCTGACGAAAATGGAGAAACCCCATCTCTATTAAAAAAACAAAATGAGCCGGGTGTGGTGGCAGGTGCCTGTAATCGCAGGTGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCGCTTGAACTCAGGAGGCGTAGGTTGCAGTGACCCAAGATCATGCACTCCAGCCTGGTCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAGATCTGCCGGTCACGGTGACTCACACCTCTAATCCCAGCACTTTTGGGAGGCCAAAGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTAAAACCCCATCTCTACTTAAAATACAAAAATTAGCTGGGCATGGTAACACATGCCTGTAATCCCAGCTACTCGGGAGACTGAGACAGGAGAATCACTTGGACCCGGGAAGTGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTTCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAACAACAAAAACAAAAAAAAAAAAAAAGAAAAAAAGGAAGGAGATCATCTACTTTGCAGGGACGTGGATGGAGCTGGAAGTCATTGTCCTTAGCAAACTAACACAGGAACAGAAAAACACCACATGTTCTCACTTATAAGAGAGAGCTGAACAATGAGAACACATAGACACATTTAGGGGATCAACACACGCAGGGGCCTGTGGGGTTAGGAGAGGGAGAGCATCAGGAAGAATAGCTAATGGATGCGGGGCTTAATAATACCTAGGTGGTGGGTTGATCTGTGCAGCAAACCACCATGGCACACATTTACCTGTGTAACAAACCCACGCATCTTGCACATGTACCCTGGAACTTAAAATAAATAAATATATAGCTATCAAAGTTATATTTTGCTTCTTGCCAAAATCAGTTACCTTTATTTGCAGAATAGAATCCAACAACTGATTTTTGTTTAAGAAGGAATCGTAGCGTATGTCTGTTAAACACCATATAAGTAACTGACTCTGAACACCAGATGAGGCTGTAACAGGTCAGGTTTAAGCACAAGCATATAGATTCACGAAATGGCGTCAGACCCTGCCCTGGTTGCTTAGGATGCACAGGAGAATAAATTGCACTCTCTCCTTCAGTTTGCAGTCTGATGAGAGAGACAGCCAGATGTACAGTTTAATTCATGTTAGTATGGGAAGTACTGGGACTGTAATATTAATAACATGCCAACAAGGAAGGACCAGTTACAATAGCTTAGCCGGAGTGTCAAGGAAGGCTTTAGTGAGGAGGTTGCCTTTCATTTGATCTGGGCCTTGAATTTGTCAACTAAAGACAAGGGAGAAAGAGAATAGATGGAAAGCACAGAATGATAATGAGTTTGGGGCCTGATTTGTGCAAACATTCCTTATAAATTGCACTTCATGCTTGAGATGAAACAAGTTGAAAACCGTTTGAGCAGTGTTGACAGTAGAGTGCATTTTAAGGTGTGTGTCAGCTTCTCTCAGGGCCTGCAGACATTTCAGCAAGCACGCGTGTTTGGGGTCCTGCCAGTGCATCTGCCCCTGCCTCTCAGCCTGACCAGGGGAGAGCAGTTGCTGGTTGGCTGCCTTTGCTCCAGGCCTGGTTCTGTGACTTGCCCTTGCCCTAGGCCACCTCTCTTTTCAGTGATGTGATTTAATTCCCATGTATTTTGTTTTTTTTTTTTTTCAATTTGAACACCCTTATTCTCATCCCCTGAGGCCTTCGTTGAGTTTATTTCTAGGAAGAACAGTCCTGATGTAGGGAGACCTAAAGCCCAGGTCATTCTAATTCTCCTACACTCCCTGTGTTCTGTGGTGTGTCACAACATCAAGTGTTGATAAAATGTGCTGAGGATGCATGGAAACCCTGGACCATTGCAGTTCATATAAGGATTTCTTTTCTACGTTTAAACTGTGGTGTAGACAGTATGCCAGCTATTTTCAGGTTTTATTATTACTTTTTAAATTTATAGGTTAGCATAATTTAAAGTGTCAGGAAACAAACCTTTTAGATTTAATCTAGAAATTCTGGACCATCATTCTTTAAACAGCTCTGTTAACTTGTGAAGGTCAGGATGATAAAGATCTCACCCTATGGGAAAGCATACGTGGTACAAGTCTGTAGGTATGACCGCTTTGGAAATCAACTGTCAGTATCCTACTAGGTTGGACATTCAGGCACTCAGTTAACCAGCAGTTCTTCTCCTGGATGTGTAGGAGAAACACACACGCCAGGAAATGTGGCCAGGTGTGACCAGAGCCGCAGAAATCTGGAAACAGCCGGAGCACCCATCAGCAGGTGGAAATTATATTACAGTGTTGTTATACGACAAGGAGATGTGTCATACAGTAGTGAAAGTTAGAGGCCTGCAGTTATTTGCAATAGGCAGATGAGTCTAAGAAGTGTAATACTGAGCGAAGTCCAGAAGACTCCTATGGTAGAATTCTGTATTAACAAAATTCAAAAACAATCAGAATGAAACAGTGTTTCATTTGGCACACATATGTATAGTGAAACCTTTTTAGAGGCAGAATTACAAAACTCAGGGTTGTGGTTTTAATGGGTACTCCTTGTGGGAGAATGAGGGTGAGATGGGAGAGGTAGGTGCAGAAGATGGATGTTATCAGTCATGCTCTTGGACCTGGGTGTTGGCTTCATGGGTGTTCACTATGTAGTTATGCTTTTTTTTTCTTTCTTTCTTTTTTTTCGAGGCAGTGTCTCACTCTGCCGCCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTGTAACCTTCGCCTCCCAGGTTCAAGCAATTTTCCTGCCTCAGCCTCACGAGTAGCTGGGATTACGGGTGCCCGCCACCGCACCTGGCTGATTTTTATATTTTCAGTAGCGACGGGGTTTCACCATGTTGGCCAGGCTGGTTTCAAACTCCTGCCCCCAGGTAATCCGCCTGTCTCGGCCTCCCAAAGTGCTGGGCTTCCGCACCCGGCCTGTGCTTTTCAACTCACACATGTGTGCACATATATGTTTGTGTGATCAGAATTACATTTAATTTCATAGATAGGACTGATTTCATTAATAGACAAATGAAAAAAAATCAGCAGCAGATTCAGGGTTTTTTAAAAAATGAATGTGTTATTTTCCTTTGGCTTCTGTAACAAAGTAACCCAAAGTTGGTGGCTTGCAAAAAACAAATTTATCCTGTCATAGTTCTGGGTCTGGAAATGCAAAACCAAGGCCCTGCTGTCTCTTGACAACTGTAGGGAAGGCTTCCCTGCCCCTCTCAGTTTCTGGAGCCACCAGCAGTCCTTGGCCTTCCTTGGCTCATGGCTGCACCACTCCAACCTCTGCCCTCCATGTTCACGTGGCCGTCTTCCTAGTGCATGTCCTCACCTCTTCTAAGGGTGGCAGTCTTTAGATTTAGGGTCTGCCCGACGCCAGGGTGTCTTCGTCTTAACTGACGCCATCTTCAGAAATCTTATTTCCAAATAAGGTCACATTCTGAGGTTCCAGATAGACATGAATTTTGGAGGACATTATTGAACTCACTGTAGTAGTCAAAAGCTGTGAAAATGCCTTTTCACAGGAAAAGAAATAGAAATGATTAATAGAGAAATAGAAATGATTAATATCAAAAATATGCTTAAGACTGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCATTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCTCCTCTACTAAAAATACAAAAAATTAGCTGGGCACGGTGATGTGTTGCCTGTAGTCCCAGCTCCTCCGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCTGTGAGCCAAGATTGCACCACTGCACTTCAACTTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAGAAAAAGCACATATATATGTGCTTAACCACACATTACTAAAGAATTGCAGGTCCCACTCACCCCATTTTTTTACCTATCAGATTGCCAAAGATTGTGCGATAGAATTGGTGAGGATGTGGAAACGTGCATCCCCTGATACTGGGAGTGGAGACTGGTGTGGGCTTGTTGAAAGTCGAACACAGAAAGTTACTGAGTGGCCTTCTCTTCCCTGGCCACAGTGCTGCCCTCCACTCCCTTCTTTCTCAGCCTCCCTGCCCTGAGCCCCATCCCTATTCTGCCGCAAAACCACTGTGGGTGCCTGCAGAGTTGGGCCTTAGAAACATGCCGAGGAAAGCAAGCTCCTGGGGGAGAGGAGCAACCACGTTCCGAGGACGAGCTTCCCTCGGGTGGGCCGCTGCCCTCCTCAGCCCTCAGACCCGCCAGTCAGACTCTGGCTCTCAGCAAATCCCTCCCCAGTTCCTTCAGCAGAACAGCAACATAACTGGAGGCCAAAAGAGGACCTGAAAAGATGGATGGGGGAGGATTGAGGCATCCTGTGGCCACTGGGAAACCGCTGCCACAGTCTTCTGCTCAGCAGGGACTGTTCAGCGTGGCTCCATCTCTGGCTCTTCCTCATCAGTCTCTCCCCAGGGGCCCTGCAGTTGATGTCCTTGTGGGGAGTCCTTGCCCTTGCTCTGCTCATGGACAGGCACCCAGCAGGTGCCCATGGGATAGGGCTTAATAGTCGCCATCATCCAGCCTTAGCAAAGGTGAAGTTTGTGCTATTAGGGAAGGCCTAACCCAAAACCTATCCCAATTTTCTATGGACTAAAGATAATGTAGATTAAGGTTCTAGGTTAGTAATGTAAATACTCAGTAGGTTATGCTGCTCTGACATACTTGGGAAGCATCATTTCCAGACTCCAAACTAAGAGGCCAAGGGAAACCCTCCGTCTCTCAACCAGCAGAGGCAGACACCAGCTGGGTCCCCAGCTCCACTGTCCACCTGTGCTGTGAGTGCTGTGTGAGTGGCCATGCCTGCCTGAGCATTGCACGATAGGGGCTGTGTGAACCAGGAGCAGCTCTGGCACAGAGGAGGCGTGCTAAGGGGAAACCCTTGTGGCGAGGCCCCCACCAGCAGACTGTTCTGAGGCAAGCCGCCCTCACTGGTCAGATCTGACCAGATCTTTGGAGATACCTGTGGCATCCTGAGACACTCACACTCCGTGACAATAATGACTCAGCCATACGTAATGTGAGTGCCATAACTTAGAGGACAGCGATGGTGAGCAGAGCCATTCCTGGGGGCCCCATGGGGATCTCAGCGGGACTGAAGGAAGACAGGTTGTGTGTTTAAAGTTGATAGTACTTTCTCTCTCTGTAG
Seq C2 exon
AAACACGAAGACACCGACTGTCCCTGCGTGGTGGTGTCCTGCCCTCACAAGTGCAGCGTCCAGACTCTCCTGAGGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323:ENST00000560371:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0148516=IBR=PD(82.3=91.1),PF0217613=zf-TRAF=PU(94.7=96.4),PF086146=ATG16=PU(22.2=53.6),PF101744=Cast=PU(1.3=3.6)
A:
NA
C2:
PF0217613=zf-TRAF=PD(1.8=3.7),PF0314511=Sina=PU(15.4=37.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains