RnoINT0155202 @ rn6
Intron Retention
Gene
ENSRNOG00000008145 | Traf3
Description
Tnf receptor-associated factor 3 [Source:RGD Symbol;Acc:1304633]
Coordinates
chr6:135696308-135701514:+
Coord C1 exon
chr6:135696308-135696475
Coord A exon
chr6:135696476-135701433
Coord C2 exon
chr6:135701434-135701514
Length
4958 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
GATTTCCTTTTTCTTTGTAGAAA
3' ss Score
9.35
Exon sequences
Seq C1 exon
GTGCACCTGAAAAACGAGTGTCAGTTTGAGGAACTCCCCTGCCTGCGTGCCGACTGCAAAGAGAAAGTACTGAGGAGAGACTTGCGGGATCACGTGGAAAAGGCCTGTAAATACCGAGAGGCCACGTGCGCCCACTGCAAGAGCCAAGTCCCCATGATCACACTGCAG
Seq A exon
GTGCGCCGCTGCCTGTGCCCGTCCCTGCTCGCCAGGTGCAGAGATGACGGTCCTAACCGGGAGAGCGGAAGGGGATTAAATAGCAGTTTTCATCTAACTTTATTTCAGAGTAAAGCTGTATTTGTTTTGCCTATTTTGATTTATATGATTAACATTTTCCATTGCCTTGATTGACTCATTTGAGATGTCAAAAAGAAAGAAAGAATGAAGAATGATGACTCAAAAAAGGTAGAATTTGTAACTTGTCCAAAGAATAGCCTCAAATTGTGACGGAATGCCTGCCTTCTCGCAGCTGCCTGACACAGCCATCACTCACAGCAGGCTGTTTACCCCGCAGTGTCAGAGGCAGCTGTCTGTCTGTCTGTCTTGGAGAGAGACGCGGACTAAATGCTTCCCTGCCTTGCGGTTTTGGCGCAGTCTGCCCTGTGTATGCAGTGGAGTCATGAGACCCTGAGGGCGGAGTAGCAGTTTTAAAAACAGTCATTGGTTGAGTAAGCACTGGTTGTGTACCTACTGTGTGCCGTGACACTCCAGGCCGTGGAGTGCTTGCAGGTGGCTAAGGGGGAACTTAGGATGTGTTAGGAGAGCTGGGAGCCCTGGCCAGGCATTGCTTAGGGACCTCTGTTGACAGTGGTGAGAGGTCATCAGTGGGGGGACTGGGTTACAGCTAGGGCACAGGGTCATGGCTGAGTGTCTGTGTCTATCTTAGAGCATGTCTGTCATGGCCACATGGAGGAGGTTCCCTACCCCGTGGAATGAGGTGTGTTCTGCTCTACTATCTCAATGTTCCCTCCCGTCACTGCATCGCCTGAAAATACCATAGACATTCCCAGTTACCGAGAGCTTTGAAGGACTGTGTCTTCCCCTCTGGTGTCTCAGTAGCAGTGAGTCAGGCACTCAGGGAGCAAGTGCCGTTCAGGCGCACGCGTTAGTGCCCTGCTGTCAGAGATCCGCTTTCCTTATTGCAGAAATCAGTTGTTTGCAGAGTAGACTCAAGTAATTAATTTTTATTCGAGAAGGAACTGAAAACGTGTCACTTAAATACCACATAAGTTGCTGCCTCTGAACCCCAGGCAAGAGTCAGGAGGGTGCGTGGTTAACCACGTGTTCACAGAAAAGGGGATAATTTGATGTTATCCTCGGTCTGCAGTCTGAGAAAGGAGAAGCAGGCACACAGCTAAATTTCTGCAGTGTGGAAAGAACTGTGACCATAATGTGTACAACACACCAATAAGGCGGTCGGCTCATGAGGTAGGGCAATAAGGTGGTCGGTCAGCTTGTGTGGTAGGGCAATAAGGCGGTCGTCGGTCAGCTCGTGTGGTAGGGCTAGGGAAGATCAGAGAAGGAGCAGGACATAACTCATTTGGGTTTGTAATTGGCAGCCACAGATCGGAGAAAAAGAAGTTGGACAAGAAGGCAGTTTGAGATCTGAAGTTCCCCCAGAAATGACTGCTCCTTGTAATGTCGGGAGACCTTCCTGAGGGCAGCTAGCTGCAGGCAGCTTCAATGGCATTGCTAGGATGCTTTTATTATTGCTTTAGCTTGGTTCGCCTTACTAAGGATTGAACTCAGGACCATCCTCACAGACCAGTTCTTAATTTTTCTTATTTTAAGACAAGGTCTGACTGTCCTTGAGATCACCAATTTAGCCAGGCTGGCTTTAAATTTGGAATCCTGCCTTGGCCTCCTAAGCAGCTGGAGTCACCAGCATGTGGTACCACAACAGCCATTTGTTTTCATTTTGTTTTGAAATAGGATCTTGTATTTAAAAAAAAAAGCTCAGGCTGGTCTTAAAGTCACTAGATACATAAGGATGTGTGTGAACTGCTGCTCTTCCTGCTGTCACCTCCTAAGTACTGGGATCGTGGGTGTGTGCCACCACTACCTGCTAGGTTAAGGCCCGTATTCTTTCTCCTCTGGTTTTCAGTTCCTTACAGCCATACTGAGCCTGAAGCCAGAGTGCTGAGCACGCTTGGCTAGGCAAGCACTCCACCTGTGAGCTGCGTCTCCAGCCCCAGCAATAGTGGCACATCTCACGTCATTGCACTTCCCCCCTCGGTGACACTGCACAATCCTGACACTGGCAGAGCAGAGCACACTCCGTTTACAGAACTAGGAACGTTCTGGGACTTGCCCTGGACCTCTTCCTCTCCTGTGTAGTACGAGCATTACATCCCCAAATATTTTGTTTTTGTTTTTGGCTCTAATATATTTAATCCCTCAACTGTGAGGCGTGTCATACACTGTATAAGTTAGGACCCGTGACACGCACTGCATTGCCAGCCGGCAGTGTCCAGCACAGGATCAAACTGCACACAATTCTTGTAGCAAATCCTATTTTAATAAAGTCCTAAATCAAGCCAAATGAAATGTTTTGTTAGGCATACATAAGTGTGTGGTGACGCCTTTAGATAAAGACAGAAATGCAAAATTCTGCATGCTTTAGTGGTTACTTCATGGAAGTAAGCATGGAGTGGGCGGGAAGGTTGATCATGTGCACACATGTGTGATCAGACTTGTATTTGTGCCAGGCTTGGGTGTGTACACTACAGTCCAGGACCCAGGAAGCAGAGGCCGGGACTCAAAGCTACACTGTTTCTAGATAACCAGTCTTCCTACAACAGCTATGAAATGTATCAAGTTTTTGTTTTGCTTTGTTTGTGACAGAGTCTCATATAACCCAGCCTCCCTGAAACTTGGTGTGTAGATCAGGCTGACCCCAAACTCACAGAGATCTACCTGCATTTCCCAGGTGCTGGGATTAAAGACCTGTGCAATGTGTGTGCTTGGCCCGTATTTTTGTTTGTGCTTTCAATGGTGCATCAAAGGCTTCAACTGTTACCACACAGAGTTGCTAAATATCACACAGCAGGTTGTGACCATCCGTAACTCCCTCTTCCAACTTTCAAACGCGCCTGGCACACATGTGGTACACAGCCATACATACGAGGAAAACACTCCTACACTAATTAAATAGAATAGAAGTCATAAACCCAGGTGCTGTCAACGTTCCCAGCAGCAGCCCTGAGAGAGTACTTTCTTCCCTTCCCTAGATTCTCTTGGTTGCCATTGACTCTTCACTAGTGGCTGCTCCCAAGTCCTTGCTTGGATGCCAGTCATGAGACATAGGGCCTTGTCCCAATTCATGACAGCTGCAGAGAACCAGACCCAATAGGTCCCATTCCAAGGTTCTGAATGTGCATGATCAGGGTTATGGGAGGACAGTAGTCAACCGTTATGATGGGTAGAAGCCTAGGGCAGGCAATCAATGAGAAGAAATATTCATGAGTAGTAAGAGGAGTCCCAATATCTGAGCTGCAGGATCCCACGTGGTATCCTCCCCATAGACCGCCCTAGATTAGAATGTGGTAGAATTGGTAAACTGCAGGAATTTGCATTCTTGTGATAATGAGAGTACAGACTGGGGTCAGATTATTAGAGGGCAATTTGGCAGCAGTTCATCAAAATCTATCCTTAAAAATGTGCATCTTTTGATGCTCTTAAAACCTTCTTCTAGATATTCTCACATAAGTGTGCAAAAGTACATACAAAATTGACCTCCTAGTCTGTCCTCCCCGCCCCTCCCCTTCCCCTCCCCTTCCCGCTGTACCTTAACCTCCCCCAGTGCCATCCTGGTCTGCTCCCTCCACTCTGCCTATGTTGATGAGTCAACAGGCAAGCGCGGAGCCCAGAGAACAAAGATGGGAATGTATGGTTTCCAGGGGCTGACAAAGTCCCTGTGAGGCCTTTACCATGTTTCAGAGTCCCTCGCTGCTCTGTAGCCTGTGACCTTGGCCCTGGGGAGGGTGGTCTGCTCATGCTTGGTTTACAGATGTGGTAGGTATCAAAGGAGCAAGGCATATTACTAGGGTCTTCTACTGAAACATACAGGATGCCTTGACTTTTTGTCCTTGGAAACTCTGGATCCATGCAACCCGACATGATGGGGTCCTTGTGCAGGCTGTCCCTTCAGGTCGGCCCATGATTGGGCTCTCCCTGTCCAGTCAGTAGGGAATGGTAGTGGACTTGCTCACTAGGTAATCTGGAAGACTCTGAGCCCCTGCTCTGCAGATGCAGGGTGCATACCTAGAAAGCCCAGGCCTTCAGGATTTCCTTTGAGATTGAGCCTGGTACCCTTGCAGGCCAGTGTTCTCTGTTAAACACTTCCCTTGTGTGGGCCACCATCTTTGGCCCTGGACCTACCTAGTTAGACCGAGACTGAAGCAAGTGTCATGATCCATTCATCCACCTAAAGACAAATGTTACCGAGGGCCCAAGGAACTAGAAACCCTGCTGAGATTCAGAACTGTGCGGGGGGCCTGGGAAGGATGCTGAGCGTCCTGACCGAGCAGGATTGCTATGCTGGCACTCCTGTCTCTGCCTTCAGTGTGGGTCTTTCCTGGGCCCTTGGTTGTGATGTCCTGGACAGAGTTCTTGCCCTTGCTTTGTTTATGGACAGGTACCCCTGGCAGTGAGATTAGCAATCCTATATGTCTTCTACAGAGCTAATAATCTTACCATTTCAGTAGGGCCTAGTCCAAACTTGATCCATAGTTGTGTACTAAAGATAATCTTGGTAAGATTTCAGATGCATCCAGGAAACTCTGCCATTTTCCCATATTAGAAGGCTGTCCTATCCAGACTCCACATTGAAAAGCCAGAGAGAGAATTAGAGTATGGGCATTTGACCAACCTCACATTGTCCATCAAGCCTTTGACCTGTGGTCTGCTGGGGAGGAAGCTGATGGTCAGATGCCACCAGCCATATTCTTCACAAGTTCCTCTGAGTCACTTATGACCTGATGTCTCGAGGTTCCAGACCCTCTCATGCTCTGATGTGAATGTCACATGGTGATGGTACACCAAGCTGCCTTTGTTTCTGTGTTGGAGGGCTAGTGGGCATTGTCCAGGATGGGCTTTGGTGTTCCAGAGTTGCCAGATTTCCTTTTTCTTTGTAG
Seq C2 exon
AAACATGAAGACACGGATTGTCCCTGTGTGGTGGTGTCCTGCCCTCATAAGTGCAGCGTTCAGACTCTTCTGAGGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008145:ENSRNOT00000010906:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PU(94.7=96.4),PF041569=IncA=PU(6.4=25.0)
A:
NA
C2:
PF0217613=zf-TRAF=PD(1.8=3.7),PF041569=IncA=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]