GgaINT0054952 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14162185-14162989:-
Coord C1 exon
chr5:14162940-14162989
Coord A exon
chr5:14162286-14162939
Coord C2 exon
chr5:14162185-14162285
Length
654 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TGCTTTTTGCTCTCTTCCAGTCT
3' ss Score
10.22
Exon sequences
Seq C1 exon
CACTTGCAGTTATGGAAAGCTGAGTTGCATTGGAGAGAAACCACCACCAG
Seq A exon
GTAACATACTACTTAAGATTTTATTTAATTTTCCCTTTGCATCTTCAACCTTCTCAATTGTCTTTTTTATTATTATTATTATAATGATACAAATTCTATAAGTCTGAAATCAAACAGGAAAACAAACCAATGATTCTATAACACACCATAACTGTAAAAAAAAAAAAAAAAACAACAAAAACCTGTTTTCACTTTCAAATGACATAAACATCAAATTATTACCTCAGGGATTACCCAGCAGGAAAGAATACTTGCTCACTTCAGTGAACTTGAGGAGAAAAATGACCACCTTTTATATATTTTATTTAAAATTAAAGAACTAAAACCCAGTCACTTCAAACATTCAAAGTAAAACAGGATCTTTGTTTTCTTGTTTTTCCTTTGCTGAAAAGAAGTGTTTCATGAAGCTAACTGGACATTAGCTTCTATGAACAGTCATAGCATACACATAAAACCAAAATGGACATGACTTCAGAACATTTGTTTCTACCTCTGGTCAAATGCATTCTCCTAATGTATTTGAAACATATGTTTGGGGTTTTTTTGGTATTGATTTTTTTTTGTTTGTTTGTTCATTTTTGAATTTTTAAGGAAGCACAAAGATACAAATACATGGTTCATTTCACACTTCTTGTGCTTTTTGCTCTCTTCCAG
Seq C2 exon
TCTGTGCACCTCCTATGGTGTATGTTGACTGTGGCAATGCCACTGCAGGTGTCACAGGAGCAGAGTGCCAGAAGAGCTGTCAGACTCTAGACATGGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(51.6=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]