GgaINT0055160 @ galGal3
Intron Retention
Gene
ENSGALG00000004260 | PKP3
Description
NA
Coordinates
chr5:1579936-1580420:-
Coord C1 exon
chr5:1580333-1580420
Coord A exon
chr5:1579972-1580332
Coord C2 exon
chr5:1579936-1579971
Length
361 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGT
5' ss Score
8.61
3' ss Seq
GGTGGCTTGCTTTCTTGCAGAAG
3' ss Score
7.84
Exon sequences
Seq C1 exon
CTCAGACAATGAGAAGTCCTCCCGGGCAGCAGCCAGCCTCCTGGGCAACATGTGGCAATACACCAAGCTCCACCGGGACTTCAAGGTG
Seq A exon
GTACGTACCTCCTTCTGGGGTGGGAGAGCCTATGGAAGAGCCCAAGGGAGTCATGGCTGGGGGCTTCACCCTGGAAATGTGCTCCACCCAAATGCTTCCAGGCGTATGACTTGCCCTGACTCCACACCTTCACTTTATGTAGAGGTAGAAACGCCCCCAGAGCATCATCCTTATGGTGCCAGGTGCCTAGAGGGATGGGAACACCCATGTGTCCAGAGTGGGCACAGCATGCCAGAGAAGTGTGTGTTTGCATTCCCAGTCCCTACCTCCTGAAAAAGTGTGGCCATAGGTGTCCTTGAGCAGGGGCAGTGACAGCACCAAGGCCCCCCCACTGGGTGACAGGTGGCTTGCTTTCTTGCAG
Seq C2 exon
AAGGGGTACCGGAAGGAGGACTTCCTCAGCCTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004260:ENSGALT00000006774:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]