RnoINT0112317 @ rn6
Intron Retention
Gene
ENSRNOG00000015152 | Pkp3
Description
plakophilin 3 [Source:RGD Symbol;Acc:1309133]
Coordinates
chr1:213897109-213897783:+
Coord C1 exon
chr1:213897109-213897196
Coord A exon
chr1:213897197-213897389
Coord C2 exon
chr1:213897390-213897783
Length
193 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
CTGTCCTCTCTTCACTGCAGAAA
3' ss Score
10.76
Exon sequences
Seq C1 exon
CCCTGACAGTGAGAAGTCATCCCGGGCAGCCTCCAGCCTCTTGGCCAACCTCTGGCAGTACAGCAAGCTCCACCGTGACTTCCGGGCG
Seq A exon
GTATGTTTTACAGAGTCCATCAACGGGGTCTTGGGGCATGAGGCTCAGTACAGGATGCAGGTCACCAGGAGAGGGACACAAGCCTGGAACACAGAAGCAAGGGGCCCAGGCTGTGCACGGAACATTATAGGGAAGGCAGGATCTCAGGGATAGCAAAGGCAGTCCTGATCTCTCTGTCCTCTCTTCACTGCAG
Seq C2 exon
AAAGGCTACCGGAAAGAGGACTTCCTGGGCCCATAGGTGAAGCCTCCTGGAGGTGAAGTGATTCAGCTTCCAAGAGACAAGCTCAGCTCCTGCTGTCCCACAGCATACAGAAGAAGAGCTGATGACCACAGGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGGAGTCCCATGTGTGCTCTTGAGGGACCAGGGCCACCAGAAAAGAACAGGCGCTTGCAACTGGAAATTGGCTTCTGCAGGCAGGGAAGGGGGTAGGGCTTGAGCTGCTCTGGTGTGCTGGGTGGTGATCAGTCACAATGGCAAGGGTGGGGCTGCCCCTGGCCTGATAGCTTTGTGACGGGCAACATTGGGAATAAAGGTGGTTTTGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015152:ENSRNOT00000020864:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCAGTACAGCAAGCTC
R:
CCTCAAGAGCACACATGGGAC
Band lengths:
243-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]