GgaINT0055930 @ galGal3
Intron Retention
Gene
ENSGALG00000005318 | F1NZZ9_CHICK
Description
NA
Coordinates
chr5:8360892-8361875:-
Coord C1 exon
chr5:8361840-8361875
Coord A exon
chr5:8360983-8361839
Coord C2 exon
chr5:8360892-8360982
Length
857 bp
Sequences
Splice sites
5' ss Seq
TATGTATAA
5' ss Score
-7.25
3' ss Seq
GTTCTAACTCTACAATGCAGCAT
3' ss Score
3.28
Exon sequences
Seq C1 exon
GTGACTTCAAAAAGGAGTTTCCCTTAAGACAGGTAT
Seq A exon
GTATAAAGCAGTAATTTATTGAAATGCAAATAGAATTAATGGAAAAATGTAGAACAGAACCTCAAACAATGCATAAAATCTAATTAATGATGTCGGTTCTGTGTATGAAAGTATAGTTTCTAAACAGAAAATATCAGGTGAATTGATATTACTTTCTGCTCATCTGTGCTGAAACTATCTACTTATCTGGTGTCTATTTCTGTGAATGGAATGTAAAAACAAAGAAAAAAGCCCAATTGTTTTCATCCTATTCCTGAATATAATTTATTTTACAGTTGAGGTTATATTTTGATTTTCTGTGTGTGTACTTTGTTTTTGATAAATGTCTTGCTGGCTTACCTTGGCAAGGAGAAGGAAAGGCAAAGAAGAGGCATTTTTACACATACCTGTACTTTCTAGCAGTAGTTATCTGGAGAAAAACACTTCTGCTTCTTCCAGTCCCATTTTGTACTGTTGCAAAAGTATCCTGCTGCAAAATAGCTAAGAATTGTCTTACAAATGGACAGCAATAAATGCTGATGTCCTGAAGTACGCATTTTTCCTCTCTGAAAAATCCTGATACCAAAATCATCATTTAACAAATACTTTCTTTAAGGTGATAAGCAAGCACCACTGTTTTTACACTAAAATTTGATAGGGCTCTGGCAAAGCTTGTTTTTTTTTTTCTTCCACATTATGTGTTTTAAAAGTGACTTGCTGCAATTTCAAATAGAAGAGAGGGAAGGCATCATTCTGCCATCAGAAACAAGGTACAGATGAGCAGTCTTAAGTCTCACAATATTCTCTAGATGTTTGGTGTAACAGAGGGTTGTGTATGTGTCAAACCTGACTCTTCTTGTTCTAACTCTACAATGCAG
Seq C2 exon
CATTTTGTAGTGTTCAGGATGGCAAACTCACAGACAGTGAAGGAGAATTAAATTTTCCTGGAGGTTCCGAACAGTTCTATCAAAACCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318:ENSGALT00000008522:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(25.2=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]