HsaINT0119115 @ hg19
Intron Retention
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:29970]
Coordinates
chr11:7718256-7720320:-
Coord C1 exon
chr11:7720297-7720320
Coord A exon
chr11:7718347-7720296
Coord C2 exon
chr11:7718256-7718346
Length
1950 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTCCTGGCTTTCCCTCCCAGCCT
3' ss Score
7.45
Exon sequences
Seq C1 exon
GTAATCGGAGAAAGAGCTCCAGAG
Seq A exon
GTGGGTATCCCTTGCAGGCTGCTCCATCAGGAGCACAAATTAACATCTAGCATTTCTGAATATCAGTTCCTGAAGTCTTCCTCTCCAAGAGCGCTCCCTGCTCAGTAGGTCTAAAACTACCACCTGGAGCACCTACAGCCATTATGCCCAGCAGAAGCCCCAGTTGCCCTCCCATTTCATTTCTTAGCAATCCAGAGCTCTGTCCCAATTCAGCCAACCTTTGCCAAACACTAGCTTGGAATCAGAGACTCAAGGAAAGAGGGCAAGGCAGTGCCGATGTGGTCAGTAAGCTACACACCTTGCCCTGAAAGTGTCCCTACTTATATAGGGTCTCATCCCCTTTGTTCCATTGCGATCCTGCGATGAATTCACTCTGTGACTTTGGGCGAGCCTTTTCCTAACTCTGGCCCTCATCCATAAAGAAAATAGTGTGGGCCAGATGGTCTCTAAGACACTTTAGTTCAAATCTTTAGTTGTTCTTTGAACCCGTGGAAAGATCTACAAAGAGCAATATAGAAAAATAGTACCCTGAGAGCTCAGAGGAATGAGAGGCTGCTTCTAGCTGAAAACAAATAAACTCACAGGGGAGCTCTGATGCACAGACATCTTTGAAGCTGCAACTGGAAGGAGGAGTAGGATTTTGTCAAGTGGAAATGGAATATGGGTAAAGAAAAATATTCCAGCTCAAGGAATCATCCTTATTAAAGGAAAGGTCTTAAGGATGAAGACAGCAACAAAAGCACAGGGCATGTGATGAGGATTTATAAGGGAGAAGAATAGAAACATAACTTGAGATCAAACTATGGAAACTTTAAATGCTAGCCAAAAAAGTTTGGATACGATTGAGTAATAGAAAGCTGATTAATTAGATAAGTAGGTTTGAACTATATTTTAATAGTGTAAGAACAGCATGTAGGGGATGGGTTGCGAGGGGACAAATGCATGGACGTATGAAATTCTTCATTAGTTTGAGAGACAAGAAATGAAGGTTTGAACCAAGGCAATATCCACAGAATGAAAAGGAAGGAATAGAAACGAGAAATGAGGATTGGGAGCCAATTAGATGAAAGGTTGTAACGAAGAAGGAGGAAGAGAAGATAGTACCAAAGTTTTGAGCATGAGAGACTAAGAGAAGGGCACACAAAAATAATAAAATCAGAAGTGGGTGCAGTTTTGCTGACCCAAGGAATTCTATTTATAGCATATTGAGTTCTGAGGGAGACAGCTAGGAAACCGTCATAAAAAATCAGGTCTGAAGTTCAGAAATGTAGAGATGACATCTGAAATGGAGGGTGTGAATGAACCTGGTCCAAGGGATCATAGAGACAGAGCAGATGAGGACGAAGGCTAGAAGCTGGGAAATACCTGCACTTATAGAATAAAGTATGAGGTCAGCAAAAGAAGAGTAAAGGGCCAGAGGTGGCTCACGCCTGTAATCACAGCAATTTGGGAGGCTCAGGTGGGAGGATCGCTTGAGTCCAGGAGTTCAAGACCAAGCCTAGGCAACAAAGTGAGACTCTGTCTCACAAATAATTTCTTCAAAAAATTAGCCGGGTGTGGCAGTGTGAGTCTGTGGTCTCAGCTGCCCGACAGGCTGAAGCAGGAGGATTGCCTGAGCCCAGGAGGTTGAGGTTGCAGTAAGCTGTGATCGTGCCACTGCACTCCACCCTCGGTGAGAGATTGAGGCCCTGCCTCAAAGATAAAATAAAATAAAATAAAAAGAGAGAGAAGAGTTAAGGAAAGAAAACCAATCATAGAATCTCAAGGTTAAGCAGGATCTAAAAGGAACCAAAAAGGCATCATAGAAGCAAAGACAGGAGAAGATTTCATGAAGAACGAAGAGTACATCAAGAAGAACCAGGAGGCTATGGTGTTTGCAGCTTCTGGAGGGAGGGGCTGCTGTGGTTAACTGGCATAACTAACCCTGACTCTCCTGGCTTTCCCTCCCAG
Seq C2 exon
CCTGGTGCAGTGAGCAGGATGTCATAGTCAGCGGGGCTGAGGGGAAGCTGCACTTCCCAGAAAGCCTCCACCTATATTATGAGAGCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378-OVCH2:NM_198185:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(25.9=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)