MmuINT0114172 @ mm9
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:114933837-114935654:-
Coord C1 exon
chr7:114935631-114935654
Coord A exon
chr7:114933928-114935630
Coord C2 exon
chr7:114933837-114933927
Length
1703 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GCTGTGGCATTTCCTCTCAGCTT
3' ss Score
5.25
Exon sequences
Seq C1 exon
GCCATCGAAGGAAGAGCACCAAAG
Seq A exon
GTGGGTATTCCTTGTAGCCTGCACTCGCAGGAGCATGAGTTAACATCCTAACATTTCTGGGAGTCAGTTCCTGTTATCATCTAAAATCTTCTTCTGGTTGTGTTTCAGTCATCACTTGGTATAAAACTCTGATGAGCATCCACAGCTGTCCCTGCCAGTCAGCTAATTAAATGTCCACGGAGCCCCATTCCCTTACATATATCTTTGTATCAAGTCATAGCTTTATCCAATTCAGCAAACACTAAGTGACAAACACTGACTCTCAATTAAATAATAGAATAGGGGAAGTGGTACAGAAATAGTTAAGTGACATACACTCCCCTGAAAGTTCCCCTACTTACACAGGGGGCTTATCCCTGTTCACCATGACTCTTTGATGAATTCACTCTGAAATTTGGGGCAAGCCCTGTCCTCGGTTACATTATCTATAGCAAAATGAGAGTGGATCTTGTCTTAGTTGTCTACTGGGCCTTTGAGCCTATAGGATTATTCCTAAAAAAGCAAAATGAAAAATAGACTCGCTAGATCTAGGCTGCTTGCAGATATAAGTGACCAATGTCATAAGCTTTGGAACAGAGACATCCTTATCCAGGATAGACCACAAAGGATAAAGAAGGAAAAGTATGGGCAAAACATCAAGCCAACCAAAGCAGCTTAAGTGTAGATATATAATGGAGTCTCACAAAAGAAAAGAATAGAAAGATAACTCGAGATCAAACTCTGGAAACTACCCCGTCAGTCAAAAAACAGACTTCACTTTACAATAGAAAGTTGATTGTTTAGATAAGTACATTACAGTTATATAATAAAAGAATATAATAGTAGCATGAAGGAGATTAAGGGAAGAATAAGTCAAGTGGAATTCATGACAGATTTAGATGAGATGGATGGATGGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGTGGATGGGTGGATGGGTGGATAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAAGGATCAAAACAGGATAAGGGCCAAAAAAGAAAAAAGAAATAAAATTTGGGACCAGTTTAGTGAGGACTGAAAGTGAAGAGAAGGAGAAATCCAGCTTGACCTTTGACATCATCACAGCTTTGAACACAAGAGCCTGAAAGTTCATCCATAAATCAAAGGTAGCTGCAGTTTTGCTCATGAAGGTGATTCCACTTATACCGAGTGTTGCGTTTCAATGGAGATAACTGAACATTAGTGTAAGTCTGACCTAAAGTCCAGAAGGGTATTGGTAAGAGGTGAAACTGCCAGCATGGCTAAGCCCATACTGAGGTCTCCAATAAAAAGGGAAAAGGAAAAGTAGGGTAGAACCTGGGAAGTGCCTGTACCCACAGAATGAAGCCTCTGAGTCTGAGTGATGGGGGGCAGGTCACAGCATCTCGAGGATAAGCACAGCCTAAGATGGACAAAAACACAAAACTATGAAGCATTATAGAAGCCAAGACAGGAAAGAAATAGTGCATGAAGAACAAAAGTGTACAGAAAGGAGAAACAGTGGCTCCCATGTCTTCAGCTTCTGTAAGGATGATGTGGTGATTAGAGCATAGGCTGCCATGCCTCATGCTGTGGCATTTCCTCTCAG
Seq C2 exon
CTTTATGCAGTGAGCCTGATGGTCTCATCAGTGGGTCTGAGGGAGAGCTGCACTTCCCAGAAAGCCTCCACCTGTACTATGAGAGCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-Ovch2:NM_172908:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(25.9=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: