GgaINT0057261 @ galGal3
Intron Retention
Gene
ENSGALG00000020492 | MUC6_CHICK
Description
NA
Coordinates
chr5:16125573-16126672:+
Coord C1 exon
chr5:16125573-16125780
Coord A exon
chr5:16125781-16126549
Coord C2 exon
chr5:16126550-16126672
Length
769 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TGCACTTCTGGTTGTTGCAGCTG
3' ss Score
8.51
Exon sequences
Seq C1 exon
GCCGTGATCTGCTCTCAGCTGCTTAACCTGGTGTCACCAACTTGCAGTGTTCCAAAGGATGGGTTTGTCACTCGTTGTCAGCTTGACATGCAGGACTGCAGTGAGCCAGGACAAAAGAACTGTACTTGCTCTACACTGTCAGAGTATTCAAGGCAATGTGCTATGTCCCATCAAGTAGTGTTCAACTGGAGGACTGAAAACTTCTGCT
Seq A exon
GTAAGTTCAGATGTTTTTTCATATGGATTGCATTTAATCTAGACCATGAGTAGTAAATTGATAAAAATAAATTGCTTTGATGGGAACATATTTTTTTTTCCTCACAGAAAAGATCAGTTACCTTGAAAAAATCTTTGAGATTGGCTAATATTTAGATTTTAGCATAAGAGTAGTGAAATCCCTTTTTTAATTTCAAGGTCTGGTATCATTTCACCCTACCTCCATCTCTTGTGCTGTATTCATCTGTTCTTTTTATCTTCATATGTATTGGCAATGCTCTTTTTTTTTTTTCTACTTACTGATGAGATTTTTTTCATTCTTTCCTCATACATACTGAAAGCTTTCCCTTCTAATTTCCATTACTATCCCCAAATCTTTTCATTTGCACTTCTTTCTGAAGCAGTTTTTCTTCTTCTCCAACATTATCCCTCTTACATAAATTGTTAGCCCATTTTATCTTTTGGTTGGTTTTTAATTTATTGTAATCCTTCAAAAAGAATCAGTGTCTACAAAATGCCCTGAGGAATTTATAAATGTAAGTAAGGCACAATATATATTCACAGAACTGTATATTAGTTCTTAATAATCACAGTGAAACAATATCCCAGTCGTCTCCAAATCATAGCCGTTTTCGTGCTGAGTACTGAGGCAGGGTAAGAGACTATTCGTGCTAGTTTTCACAACATCTTCTCCATCCCCTGTTGTAAATGAGAGATTCTTCTGTTTACACATTAAAAACCTTAACACTATGCACTTCTGGTTGTTGCAG
Seq C2 exon
CTGTGGGGAAGTGTTCTGCTAATCAGATCTACGAGGAATGTGGTTCTCCATGTATTAAAACCTGTTCCAACCCTGAGTACAGCTGTTCCAGTCACTGTACCTATGGTTGCTTTTGTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020492:ENSGALT00000032694:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.2=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(66.1=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTGCTCTCAGCTGCTT
R:
TCTGGACAAAAGCAACCATAGGT
Band lengths:
326-1095
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]