HsaINT0106878 @ hg38
Intron Retention
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr11:1030213-1030780:-
Coord C1 exon
chr11:1030573-1030780
Coord A exon
chr11:1030336-1030572
Coord C2 exon
chr11:1030213-1030335
Length
237 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GGAGCCGCGTGTGCCCACAGCCG
3' ss Score
4.84
Exon sequences
Seq C1 exon
GCCCGGATCTGCACCCAGCTGCTGACCCTGGTGGCCCCTGAGTGCAGCGTGTCCAAGGAGCCCTTCGTGCTAAGCTGCCAGGCGGACGTGGCCGCAGCCCCCCAGCCAGGCCCACAGAACAGCAGTTGTGCCACCCTGTCGGAGTACTCCCGCCAGTGCAGCATGGTGGGCCAGCCGGTCCGCCGCTGGCGGAGCCCCGGCCTGTGCT
Seq A exon
GTGAGTCCAGGGAAGGGAGAGGGAGGGGCAGGAAGGCCGAGGGCTCCAGACCCAGCTCTCCCAGCCCCTGGACTGCCTGACGTGACGCCTGCATCCCTCCTGGTCTGAGAGACAGGAGATCCTCGCTGCTGCTTCTAGATGGAGGAAGGGCTGGGCTAAGTCCTCCATCAAGCTGGGGTGGGGCAGGGAGGGGTGGGGGGGGTGGGACCCTCTCACCGGAGCCGCGTGTGCCCACAG
Seq C2 exon
CCGTGGGTCAGTGCCCGGCCAACCAGGTGTACCAGGAGTGCGGCTCGGCCTGCGTGAAGACCTGCTCCAACCCGCAGCACAGCTGCTCCAGCTCCTGCACCTTCGGGTGCTTCTGCCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956:ENST00000421673:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.2=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(66.1=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTGCAGCGTGTCCAAG
R:
CTTCCGGGCAGAAGCACC
Band lengths:
294-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development