RnoINT0095785 @ rn6
Intron Retention
Gene
ENSRNOG00000056817 | Muc6
Description
mucin 6, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:628826]
Coordinates
chr1:214625709-214626163:-
Coord C1 exon
chr1:214625956-214626163
Coord A exon
chr1:214625832-214625955
Coord C2 exon
chr1:214625709-214625831
Length
124 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCCATGCCTGTTGCCTGCAGCCA
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCACATATCTGCAACCAGTTACTGACCCTGGTGTCCCCTGGGTGTGACGTGCCAAAGGAGACACTGATGTTGAGCTGCCAGGAAGACATGGCTGACTGTGCCCAGCCAGGCCAGCCCAACTGCAGCTGCGCCACACTGTCTGAGTACTCCCGCCGATGCAGCATGGCTGGCCAGCCTGTCCGAAACTGGAGGACCCCCAGCCTCTGCC
Seq A exon
GTGAGTTCAGGCAGGATGAAAGGGAAAACAGTTTTGAGAAGGGCAGAAACTAAGCAAAAATAAAGTAGGAACTCAGGAAGGCAGGTGAGATCTCCTTACCAGATCCCATGCCTGTTGCCTGCAG
Seq C2 exon
CCATGAGCCAGTGCCCGGCCAACCAAGTGTACCAGGAGTGTGGTGAGGTCTGCGTCAAGACTTGCTCCAACCCACAGCACAGCTGCTCCAGCTTCTGCACCTTCGGCTGCTTCTGCCCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056817:ENSRNOT00000087497:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.2=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(66.1=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCAGTTACTGACCCTGG
R:
CCTCACCACACTCCTGGTACA
Band lengths:
246-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]