DreINT0099119 @ danRer10
Intron Retention
Gene
ENSDARG00000058556 | muc5.2
Description
mucin 5.2 [Source:ZFIN;Acc:ZDB-GENE-121108-1]
Coordinates
chr25:8338752-8339249:+
Coord C1 exon
chr25:8338752-8338965
Coord A exon
chr25:8338966-8339123
Coord C2 exon
chr25:8339124-8339249
Length
158 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TGTCTTATTTTGTGGAGCAGCAA
3' ss Score
2.93
Exon sequences
Seq C1 exon
AACACAATGGTTTGCCAGCAGTACCTCAGCAGTCCAGGGTTTAGTGGCTGTTATGATGTGATGGACATGAAAATATTTGAAAAAGCCTGTGTGAGCGACATGTGCCAATGTTACGGCAGCCATGACTGTCTGTGCAACACGCTAACAGAGATCTCACGACAATGCACACATGCTGGAGGACAACCAGGAACATGGAGGACAGAACAGCTCTGCC
Seq A exon
GTGAGTATCACTTCTAAAAAATAATGAAAAAGAAGGCATAAAATTTCATGTTTACATCGATTATAATCCTTACCCATTAAAACTATACTAGCATGACTTATTATCTGGTCATTTTAACACATTTAATACAAGACTAATTGTCTTATTTTGTGGAGCAG
Seq C2 exon
CAAAGATGTGTCCTATAAACCTGCAATACATGGAGTGTGGAGGTCCGTGTAAGAGCACTTGCTCTGATCCAACTGCACATCTAATGTGTAAAGATCACTGTGTGGATGGCTGCTTCTGCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058556:ENSDART00000153536:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(94.7=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(68.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGCCAGCAGTACCTCAG
R:
CGGACCTCCACACTCCATGTA
Band lengths:
253-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]