RnoINT0000892 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214729329-214729761:+
Coord C1 exon
chr1:214729329-214729540
Coord A exon
chr1:214729541-214729635
Coord C2 exon
chr1:214729636-214729761
Length
95 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TCTTTCTGGTCTTCTTGCAGCTC
3' ss Score
11.32
Exon sequences
Seq C1 exon
CATCTGTGAAGAGATCCTGAAAGGTCAGCTGTTCTCAAACTGTGCGGCCCTGGTGGACATCAGCAGCTACCTGGAGGCTTGCCAGCAGGACCTCTGTCTCTGTGAGAGCTCTGACCCGTCTAACTGCATCTGCCATACCCTGGCTGAGTACTCTCGGCAGTGTGCACATGCCGGAGGACAGCCTCAGAACTGGCGGGGTCCCAACCTCTGCC
Seq A exon
GTAAGTACCCTCAGCCTCACCTTCCCATCATAGCATCAACCGTCTGGTAAATGGGACCTGACTTGATATGACCTTTCTTTCTGGTCTTCTTGCAG
Seq C2 exon
CTCAGACCTGTCTCCTCAACATGGAGTACCAGGAATGTGGCTCACCCTGTGTAGACACCTGCTCCAACCCCCAGCATTCCCAGGTCTGTGAGGACCACTGTGTTGCTGGCTGCTTCTGTCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(92.2=100),PF0182612=TIL=PU(13.0=12.5)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=FE(60.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGACCTCTGTCTCTGTGA
R:
AGCCACATTCCTGGTACTCCA
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]