BtaINT0096530 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51403340-51404049:-
Coord C1 exon
chr29:51403848-51404049
Coord A exon
chr29:51403475-51403847
Coord C2 exon
chr29:51403340-51403474
Length
373 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
ACGCTGCCTCCCCCCCGCAGCCC
3' ss Score
11.16
Exon sequences
Seq C1 exon
GAGGGCGTCTGCCGCCGCACCCTGCTGGGCCCCGCCTTCGCTCCGTGCCACGGGCTGGTGGATACCGAGGTGTACGTGGCCGCCTGCACCCAGGACCTGTGCCGCTGCCCCACCTGCCCCTGTGCCACCTTCGCCGAGTACTCCCGCCAGTGCGCCCACGCGGGGGGGCAGCCGCAGAACTGGAGGGGCCCTGACCTCTGCC
Seq A exon
GTGAGTGCCCCGGGGAGAGTAGGGGGAGGTGGCCCCAAGCATGACGCCTGGCCCCTGGCTGGGGACCCCCGGCAGGCAGAGCCCTTTGGGGGCCCACAGTGAGAGGATGGCAGGAGAGCATGGGGTGGTGCAAGGCCTGGGCATCTGGGGGCCCAGAGGGTGGTCCTGGCACATTGAGCAGGGTTCCCCCTGAACCCAGGTGGGGGCTGGAGGCTGTCCTCAGGGGCATGGGACCCATGGTCCCCTCTCCTCCTGCCTCACCCAGAAGACAGCTAGACAGGGCAAGAGGCCCTCATTTCCCGGACCCTTGGTGGCACATGGCGGGCGGGGGCAGGCGTGGCTTCCTGGGCCAAACGCTGCCTCCCCCCCGCAG
Seq C2 exon
CCCAGACATGCCCCCTGAACACTCAGCACCAGGAGTGCGGCTCGCCCTGTGTGGACACCTGCTCCAACCCCGAGCGCTCCCAGCTGTGCGAGGACCACTGTGTGGACGGCTGCTTCTGCCCCCCAGGCAGGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(70.0=91.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACCGAGGTGTACGTGG
R:
CAGAAGCAGCCGTCCACAC
Band lengths:
262-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]