HsaINT0106847 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1249794-1250525:+
Coord C1 exon
chr11:1249794-1249995
Coord A exon
chr11:1249996-1250399
Coord C2 exon
chr11:1250400-1250525
Length
404 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCCCACCTCCTTTTGCGCAGCCC
3' ss Score
6.71
Exon sequences
Seq C1 exon
GAGGGCATCTGCCACCGCACCCTGCTGGGGCCGGCCTTTGCGGAGTGCCACGCACTGGTGGACAGCACTGCGTACCTGGCCGCCTGCGCCCAGGACCTGTGCCGCTGCCCCACCTGCCCGTGTGCCACCTTTGTGGAATACTCACGCCAGTGCGCCCACGCGGGGGGCCAGCCGCGGAACTGGAGGTGCCCTGAGCTCTGCC
Seq A exon
GTGAGTGCTCCCAGGGCCTTCGCCAGGGATTGTGCCAGAGAGAAGGGGCAGGGGGAGCGCCTTGGGGGCCACTGGGGGTGGGGAGGCCTGGGGGACAGGGGTGGAGGGCAGAGGACCCACCCCAGGCATAGTGGGCAGAGGCCACCCCAGGACCCCAGGAGGGGGTGGGGCCTCCGGGGGCTGCAGGAGAAGGAGAGGCTGTGGAGAGGCTGTGCAGCAGGTGGCGGGGGCTGGGGCTGGAGGGTGGAGCTGCCCACGATGAGGGGCGTCAGGGCCACCCTGGGGCCTAGCTCTGGCTTCTGTGGACTTGATGGCATGTGGAAGGCCGTGGAAGGCGGCTGGGGCTGACCACACGGGCAGTACAGGGCCCTTCCCCTGGCCCAGCCCCACCTCCTTTTGCGCAG
Seq C2 exon
CCCGGACCTGCCCCCTCAACATGCAGCACCAGGAGTGTGGCTCACCCTGCACGGACACCTGCTCCAACCCCCAGCGCGCGCAGCTCTGCGAGGACCACTGTGTGGACGGCTGCTTCTGCCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(70.0=91.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCCACCGCACCCTG
R:
GAAGCAGCCGTCCACACAG
Band lengths:
312-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)