HsaINT0106847 @ hg38
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1228564-1229295:+
Coord C1 exon
chr11:1228564-1228765
Coord A exon
chr11:1228766-1229169
Coord C2 exon
chr11:1229170-1229295
Length
404 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCCCACCTCCTTTTGCGCAGCCC
3' ss Score
6.71
Exon sequences
Seq C1 exon
GAGGGCATCTGCCACCGCACCCTGCTGGGGCCGGCCTTTGCGGAGTGCCACGCACTGGTGGACAGCACTGCGTACCTGGCCGCCTGCGCCCAGGACCTGTGCCGCTGCCCCACCTGCCCGTGTGCCACCTTTGTGGAATACTCACGCCAGTGCGCCCACGCGGGGGGCCAGCCGCGGAACTGGAGGTGCCCTGAGCTCTGCC
Seq A exon
GTGAGTGCTCCCAGGGCCTTCGCCAGGGATTGTGCCAGAGAGAAGGGGCAGGGGGAGCGCCTTGGGGGCCACTGGGGGTGGGGAGGCCTGGGGGACAGGGGTGGAGGGCAGAGGACCCACCCCAGGCATAGTGGGCAGAGGCCACCCCAGGACCCCAGGAGGGGGTGGGGCCTCCGGGGGCTGCAGGAGAAGGAGAGGCTGTGGAGAGGCTGTGCAGCAGGTGGCGGGGGCTGGGGCTGGAGGGTGGAGCTGCCCACGATGAGGGGCGTCAGGGCCACCCTGGGGCCTAGCTCTGGCTTCTGTGGACTTGATGGCATGTGGAAGGCCGTGGAAGGCGGCTGGGGCTGACCACACGGGCAGTACAGGGCCCTTCCCCTGGCCCAGCCCCACCTCCTTTTGCGCAG
Seq C2 exon
CCCGGACCTGCCCCCTCAACATGCAGCACCAGGAGTGTGGCTCACCCTGCACGGACACCTGCTCCAACCCCCAGCGCGCGCAGCTCTGCGAGGACCACTGTGTGGACGGCTGCTTCTGCCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983:ENST00000525715:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(68.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCCACCGCACCCTG
R:
GAAGCAGCCGTCCACACAG
Band lengths:
312-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development