DreINT0099074 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8287053-8288288:+
Coord C1 exon
chr25:8287053-8287263
Coord A exon
chr25:8287264-8288162
Coord C2 exon
chr25:8288163-8288288
Length
899 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
CATGTTGTTTTGTGGAGCAGCAA
3' ss Score
3
Exon sequences
Seq C1 exon
GCAAGCTTTTGCGAGGAGTACCTCATCAGTCCAGGGTTTAGTGGCTGTTATGATGTGATGGACATGAGAATATTTCAGAAAGCCTGTGTGAGCGACCTGTGTCAATGTTATGGCAACCATGACTGTCTGTGCAACACACTAACAGAGATCTCACGACAATGCACACATGCTGGAGGACAACCAGGAACATGGAGAACAGAACAGCTCTGTC
Seq A exon
GTGAGTATCTTTTCTGGAAGATGACATTCATCAGAAGCCATTCAAATGATGTGCAATGTATTTATTGATTTCAGTGTACAAAGCCTAAATGAACAATAAAAAAACATTCATTATCTACCAATAATGATGCAGAGAAAAATAAATCTTAAGGGATATAATTTTACTATGCTGTTTTTTTTTTTTTTTTTCCCAGGAAACAATTTTAATAACAATTACATTAACAATTACTATTCCAGAAATTAATACTATGAATAAACAAAAATAAATAAAGCTTTTAAAGTAGACACAAAATATATGTTAGTTTTTAAAGGGATAGTGTAATTTACTGAAATTTTACTTACCCTCAAGTGGTTCCACAACATTTTTTGTTCAAGATATTTTAAAGAATGTTAGAAATTGGTAACCATTGACATCCATAGTAAGAAAACATACAACGGAAGTTAAGGGTTACCTTGCTGGTTTCCAACAATTTTTAAAATATCTGTGACAAGTAAAGTGTGAGTAAATAATGACATCATTTTGGTAACAATTTATTTTCATGGTCCATTTGAGTATTAGTAGACTGTTTACTTAATATCTGTTGATTCTGCTGCTAAACAGACATTTATCTGACTATAAGAAACTTTGCAAGTGCATGTCAACTTACTCTAACCCTAACCCCAACCTAACTATCTACTTATAATCTAATGAGATGGCATGTTGATGCAGTGTAACTTAAATTTAACAAATGGACAATCAAAATAAAGTGTGACCAAAATGTTTGGTTTTGAGTGGACTATTGTTTTAACAATACCACTGTATGCCCTGTAAATGATGGAAAAAAAACATCTGTGCCTTGTAACACATTTTAAACAAAATATATTGTTTTGTGACATGGGACATGTTGTTTTGTGGAGCAG
Seq C2 exon
CAAAGACGTGTCCCCTAAACCTGCAGTACCTGGAGTGTGGCGGTCCATGCAGGAACACCTGCTCAGCCCCAACTGCAAATCTAATGTGTACCGATCACTGTGTGGACGGCTGCTTCTGCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(68.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGCGAGGAGTACCT
R:
GCAGAAGCAGCCGTCCAC
Band lengths:
326-1225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]