RnoINT0095755 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214783928-214784702:+
Coord C1 exon
chr1:214783928-214784129
Coord A exon
chr1:214784130-214784576
Coord C2 exon
chr1:214784577-214784702
Length
447 bp
Sequences
Splice sites
5' ss Seq
GCAGTTAGT
5' ss Score
0.14
3' ss Seq
TGTGCTACTATCTCTTACAGACT
3' ss Score
8.8
Exon sequences
Seq C1 exon
GAGGGCATCTGCCGTCACATCCTGCTTGGCCCTGCCTTTGCCGAGTGCATCGCCCTGGTAGACGTCAACGTGTACCTGGATGCCTGTGTCCAGGACCTGTGCCGCTGCCCCACCTGCCCATGTGCCACTTTTGCTGAATATTCCCGCCAGTGTGCCCATGCAGGGGGCCACCCACAGAACTGGAGGCGTTCCGATCTCTGCA
Seq A exon
GTTAGTACCCTCACCAAAGGATAGCCCAAGGTCTTACTAAGGGCCAGTCTTGAGCCTAGAACATGACTGGGAAGACAAGGTAGAGAGAACCACTTAAGGGTCCCCAAGAGAGGGTGAATGTCATAGACAGAGGAGATAGTGGGCAGAATTGAAGGGAAGAGTCTATGCCTGAAGACTCTAGTGGGCCTTGCTGTGTCCCTGAGCACAGCAAGATGTCGCTCCAGAACCTCAGGGTAGGGTCACCTGGAGGACCGTGGCCTCAGGTGGCCATGGGTATAGAAGGCTGTCTATGAAGTGCTGGGCCCCTGCTTTCCTGCCTACTGCTTTATCCAGGAGATAGCTTTCTGGGACCTCAGTGGACACAAGAGCAAGCAGTGGGCATAACTCCCACTGGCTGGAGTGATCAGGACTCACTTCTCCTGGGTCATGTGCTACTATCTCTTACAG
Seq C2 exon
ACTGGACCTGCCCTTTCAACATGGAATACCAAGAGTGCAGCTCACCCTGTGTGGATACCTGCTCCAACCCCCAGCGCTCTCAACTGTGCGAGGACCACTGCATGGATGGCTGCTTCTGTCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(68.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCCGTCACATCCTGC
R:
GGACAGAAGCAGCCATCCATG
Band lengths:
318-765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]