DreINT0005237 @ danRer10
Intron Retention
Gene
ENSDARG00000100621 | CABZ01080550.1
Description
NA
Coordinates
chr25:8196584-8197017:+
Coord C1 exon
chr25:8196584-8196803
Coord A exon
chr25:8196804-8196891
Coord C2 exon
chr25:8196892-8197017
Length
88 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAAT
5' ss Score
0.91
3' ss Seq
TGACTCGTTTTCTCATGCAGATG
3' ss Score
10.95
Exon sequences
Seq C1 exon
CGGGCAGACTGCGCAGACCTTTTGGAGGATGAAAAGTGGTCTTCTTGTAGCTGGGTTTTGGACCCTGAGGCTTATATTAAGGCATGTACAAATGATCTCTGCAACCGTCAACCTGAAGACGAAGACACCACTGCACTCTGTGCAACTCTAACTGAGTATTCACGACAGTGTTCACACGCTGGAGGAAATCCACCCGCATGGAGGACAGCAAAGTTCTGCA
Seq A exon
GTAAATACCATCAGAGTTCTGGCAAAAATCATCTGATTGTTTTCACATTTTTCTGAAATTTTTAAATATGACTCGTTTTCTCATGCAG
Seq C2 exon
ATGTGCAGTGCCCCTACAATATGGTACATTCTGAGAGCGGCTCCCCCTGTATGGACACGTGCTCACACAAAGACACAAACGCACTGTGTGAGGAACACAACATCGATGGCTGCTTCTGCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100621:ENSDART00000163826:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.6=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(68.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCACACGCTGGAGGAAA
R:
AGCAGCCATCGATGTTGTGTT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]