HsaINT0106768 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1078456-1079783:+
Coord C1 exon
chr11:1078456-1078666
Coord A exon
chr11:1078667-1079657
Coord C2 exon
chr11:1079658-1079783
Length
991 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGC
5' ss Score
5.13
3' ss Seq
CGTGGCCTCTGCGGTTCCAGCCA
3' ss Score
6.16
Exon sequences
Seq C1 exon
CGCGCCGAGTGTGAGAGGCTGCTGACCGCCGAGGCCTTCGCGGACTGTCAGGACCTGGTGCCGCTGGAGCCGTATCTGCGCGCCTGCCAGCAGGACCGCTGCCGGTGCCCGGGCGGTGACACCTGCGTCTGCAGCACCGTGGCCGAGTTCTCCCGCCAGTGCTCCCACGCCGGCGGCCGGCCCGGGAACTGGAGGACCGCCACGCTCTGCC
Seq A exon
GTAAGCCCCGGCGCCTTGTGGGCAGGGGACCCCAGGGAGACCCCACGCTGGTGCTTTCCCCAAGCCCGGGTGGGAGCTGTGTCTGCGCCGGGCACCTTGAGCTGGGGGGACACTCACCGCACCGGGCACCTTGAGCTGGGGGAACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCTTGAGCTGGGGGGACACTCACCGTGCTGGGCACTGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCGTGACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGCACCGGGCACCTTGAGCTGGGGGAACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCTTGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACTGTGACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCGCGCCGGGCACTGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCGCGCCGGGCACTGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCACGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGGGCTGAGAGCCCTTCTCGGTGCACTTCGGGGTGGAGCGGCTGCTGTGCCCCAGCCTCACCCTCACTGCGTGGCCTCTGCGGTTCCAG
Seq C2 exon
CCAAGACCTGCCCCGGGAACCTGGTGTACCTGGAGAGCGGCTCGCCCTGCATGGACACCTGCTCACACCTGGAGGTGAGCAGCCTGTGCGAGGAGCACCGCATGGACGGCTGTTTCTGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(68.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGTGAGAGGCTGCTGA
R:
GGCAGAAACAGCCGTCCATG
Band lengths:
326-1317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)