MmuINT0102368 @ mm9
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148879471-148879994:+
Coord C1 exon
chr7:148879471-148879681
Coord A exon
chr7:148879682-148879868
Coord C2 exon
chr7:148879869-148879994
Length
187 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
GGAGCTGACTTTGCTTCTAGCCA
3' ss Score
3.04
Exon sequences
Seq C1 exon
CGAGCCGAATGTGAGAGGCTGCTGACCTCCGCAGCCTTCGAGGACTGCCAGACCCGCGTGCCCGTGGAGTCGTACGTGCGCGCCTGCATGCACGACCGCTGCCAGTGTCCGAAGGGTGGCGCCTGCGAGTGCAGCACCCTGGCTGAGTTCTCGCGCCAGTGCTCTCACGCAGGAGGCCGACCTGAGAACTGGAGGACCGCCTCACTCTGCC
Seq A exon
GTAAGTAGCTAGTGGCCCGTGGGGTGCTTGGCGGCCACTCACGTGGTGCTCAGTGTTAGTTAGTGTCCCTGGGCTTAGTGAGCCCCCTGGTGGGAGCCATGTCTGTGCCAAGCGCCCAGATGCTGTATCTGCCAGCGGCCTTGGTAGCTCCTTATTTGTGGACTGATGGAGCTGACTTTGCTTCTAG
Seq C2 exon
CCAAGAAATGCCCCAATAACATGGTGTACCTGGAGAGCAGCTCGCCCTGCGTCGACACATGCTCACATCTGGAGGTTAGCAGCTTGTGTGAGGAACACTACATGGATGGCTGCTTCTGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-Muc2:NM_023566:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(68.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTGAGAGGCTGCTGACC
R:
TGCTCTCCAGGTACACCATGT
Band lengths:
244-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: