GgaINT1001087 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14362033-14362824:-
Coord C1 exon
chr5:14362608-14362824
Coord A exon
chr5:14362159-14362607
Coord C2 exon
chr5:14362033-14362158
Length
449 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
3' ss Seq
TCTTTCTCATTTTTTTTCAGACA
3' ss Score
10.38
Exon sequences
Seq C1 exon
CGTGAGGAATGTGAGAAGTTGCTGACCTCCTCTGCATTTGCTGATTGTCACTCACGCCTTAATCTGGAAATGTACATCCAAGCCTGCATGCAGGACAAGTGTGCATGTAAAGGAAATGAGGACTCCTTCTGCCTCTGCAGCACCATCTCCGAGTATTCTCGCCAGTGTTCACATGCAGGTGGCCGGCCGGGTGAATGGAGGACAGAGAACTTTTGCT
Seq A exon
GTAAGCAGCTATATACGTTTTACAAAGAAACAAATATTTCATGTGTGTAGCATCGTGAAACATTTGAATAAATTCTTCCTTTTCAAAGTTATGGGCATATACCTTACATTACATGCCAGTATTGCAGTACACAACGTTCTGTGTTCTTTCTGTCTTCTTCTGTTACCTTTGTTATTAAGAAATCTTTTTCAGCTAGTAGAAATTATGTTCCTATTAAAAAGCTTGAGATCTGATGCTGTAGGTAAGATAATTCATAAACAAAAGGAAAAAAAACTAAAAACAACAGGGAAAGCAATTCAGAAACAGTCAAATATTAAGAATATTTTGCTAAATGGAGCCTGGCTTGGAACACCACTTATTTGAAGTGAGTGAGTCATATGATCTGTAGTTTCTGAGGAATGATGGAGTTAACATTCAAATAGTGTGATATCTTTCTCATTTTTTTTCAG
Seq C2 exon
ACAAAACATGTCCTGGCAACATGGTCTATAGAGAAAGCAGCTCACCCTGCATGGATACTTGCTCACACTTGGAAGTCAGCAGCCTTTGTGAGGAACATTACATGGATGGTTGTTTCTGCCCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(93.5=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(68.4=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGGAATGTGAGAAGTTGCT
R:
TTCGGGGCAGAAACAACCATC
Band lengths:
342-791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]