HsaINT1023908 @ hg38
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]
Coordinates
chr11:1078312-1081787:+
Coord C1 exon
chr11:1078312-1078522
Coord A exon
chr11:1078523-1081661
Coord C2 exon
chr11:1081662-1081787
Length
3139 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGC
5' ss Score
5.13
3' ss Seq
CGTGGCCTCTGCGGTTCCAGCCA
3' ss Score
6.16
Exon sequences
Seq C1 exon
CGCGCCGAGTGTGAGAGGCTGCTGACCGCCGAGGCCTTCGCGGACTGTCAGGACCTGGTGCCGCTGGAGCCGTATCTGCGCGCCTGCCAGCAGGACCGCTGCCGGTGCCCGGGCGGTGACACCTGCGTCTGCAGCACCGTGGCCGAGTTCTCCCGCCAGTGCTCCCACGCCGGCGGCCGGCCCGGGAACTGGAGGACCGCCACGCTCTGCC
Seq A exon
GTAAGCCCCGGCGCCTTGTGGGCAGGGGACCCCAGGGAGACCCCACGCTGGTGCTTTCCCCAAGCCCGGGTGGGAGCTGTGTCTGTGCCGGGCACCTTGAGCTGGGGGGACACTCACCGCACCGGGCACCTTGAGCTGGGGGAACACTAACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCTTGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGAGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGACGGGCACCGGGAGCTGGGGGGACACTCACCGTGACGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCTTGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCGCGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGAGAGCTGGGGGGACACTCACCGCGCCGGGCACCGGGAGCTGGGGGGACACTCACTGTGACGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACTGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACTGTGACGGGCACCGAGAGCTGGGGGGACACTCACTGTGACGGGCACCGGGAGCTGGGGGGACACTCACTGTGACGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACTGTGACGGGCACCGAGAGCTGGGGGGACACTCACTGTGACGGGCACCGGGAGCTGGGGGGACACTCACTGTGACGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCGCGCCGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGAGAGCTGGGGGGACACTCACTGTGACGGGCACCGGGAGCTGGGGGGACACTCACCGCGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGACGGGCACCGAGAGCTGGGGGGACACTCACTGTGACGGGCACCTTGAGCTGGGGGGACACTCACCACGGGCACTGGGAGCTGGGGGGACACTCACCGCGCCGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCAAGAGCTGGGGGGACACTCACCACGGGCACCGAGAGCTGGGGGGACACTCACCGTGACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGACGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGCGCCGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACTGGGAGCTGGGGGGACACTCACCACGGGCACTGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGCGGGCACTGGGAGCTGGGGGGACACTCACCACGGGCACTGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGAGAGCTGGGGGGACACTCACTGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGAGAGCTGGGGGGACACTCACTGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGACGGGCACCGGGAGCTGGGGGGACACTCACTGAGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGTGCCGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCACGGGCACCGGGAGCTGGGGGGACACTCACCGCGCCGGGCACCGGGAGCTGGGGGGACACTCACCGTGGGCTGAGAGCCCTTCTCGGTGCACTTCGGGGTGGAGCGGCTGCTGTGCCCCAGCCTCACCCTCACTGCGTGGCCTCTGCGGTTCCAG
Seq C2 exon
CCAAGACCTGCCCCGGGAACCTGGTGTACCTGGAGAGCGGCTCGCCCTGCATGGACACCTGCTCACACCTGGAGGTGAGCAGCCTGTGCGAGGAGCACCGCATGGACGGCTGTTTCTGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788:ENST00000361558:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains