GgaINT0057281 @ galGal3
Intron Retention
Gene
ENSGALG00000020492 | MUC6_CHICK
Description
NA
Coordinates
chr5:16142223-16143902:+
Coord C1 exon
chr5:16142223-16142285
Coord A exon
chr5:16142286-16143798
Coord C2 exon
chr5:16143799-16143902
Length
1513 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTTTTCCTCTTAGTAACAGCAA
3' ss Score
1.19
Exon sequences
Seq C1 exon
GCTGTTACAACTGCTCTCATGATGAATATTTTGACTATGAGAAAGAAAAATGCATGCCATGTG
Seq A exon
GTAAGTAGAACCCTGTACGCTCATCCTCTTTCTTTACAGTAGCTAAAACCTTTGAGTGTTGACCAAGAAGATATTTTCCGTAGTTACTTCTCAGTTAATGACGAGTGTTCATCCCTGTATAACTTTTCTTCAAGATAATCTTATTGTTGTACTATTAGTATGTAAAATTAGTAGACTTTACTTAGCTATTCCCTGTAAGTTCTGTGGGTTTTTAAAATTATTTTAACTTAAGATTTATTACCGTATGGTGTCCTACTCTGTAAACCTTTCATAGTAAATAATGTTGTGGATGGACTCCAGCTGCACAATTTGGATTTCCATGAATATGTGAAATTACAAAAAAACACCTCAATTACAATTGTTTATTTCATTTAACAGAATTCTTACTTGTGAAACCAGAATTTCAGCTATTGATCTCATTTACACTCAAAAAAACATTTCTATTATCCCTGGAAAGTGAAGTGCCGTTAAGCATAAAACTCATAAGAAAGACAGGAGAAACGTGCTCATGTTTATTTGTATTGTGAGTTGTATTAATTTTTTCATTATTTTTTTAAGTACTTTCATACGAAGCTTACCACTGAAATACGTAGTAACAAGGATTTTCAGGATTATCACACTAATTAGCACAATCCTTTAAAAAGACTTTATTGTTCTTCCAATCTGAAATTTGCCTTATTTGGAATATTCTTAATGCAATTCCAACTAAGAATTTAACCTGTTCTACTTTTATGTCCCAGGAGATGAAAGTATTAGTACTACACCTGAAACTTCTTCACCTTCAACAGGTTAGTTTAAGCAGTTGATTGAACAAGTACTTACTCACTGATGTATGTCCTGATATGTGTTTCTGAGATGAGAAGTATCCTTTTTTTGCTTGATATAATGGCATCATCAGTTTTTAATGCATAAGATGCAATAACAAAATGTCAGTATCATAATTATCACAAAAAATTCCCAGAAATATTTGTGTACACTGAGGCACTTCCAGATATTAGTAATGAAATTTCTTTGTTTGTGAATATGGATTTCTGTCTTCTCCCTGATAGACAAAATCACACAAAATTTTCACTACAATTTTAAATGGTGATTGGCTTTATAACACTTAACAGTTTAGGATGGGGGTCTTGGAAGCTCATGACCAAGTACATCAAGCCTCAGTAGCCTGATCCAGGAAAGAAACCTGTATTTACTGATCTTTGTTAGCAATTTCTTTACTTTCATTAATGAAAATGAGAGTTATTGGGAAAAAGGTACAGTGGTGGCTTTCTGAATAAAGCTTCTGCAAGAATCCCTATTCAATGTATTCACTGCAAATAACAATAAAGGAATAGATCGGTGAATTTTCTTAAGTATTTTGTTTGAAATTAAGGTAGGAGATATTTTCAGTTGTTACTACTGGTAATAGTTTTTCATTCTAAAAATAATTTACAATTTCTATAGGAATATTTCAATAGATTATGAATAATTATTTCTTATCCTCTGATTTTGATTTTTTTCCTCTTAGTAACAG
Seq C2 exon
CAATGCAGCCTACTTCAGTCACATTACCCACAGCTACCCAACCAACATCACCTAGCACTTCTTCTGCATCTACTGTACTGACTGAGACCACAAATCCACCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020492:ENSGALT00000032694:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.686
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]