MmuINT0102514 @ mm9
Intron Retention
Gene
ENSMUSG00000048191 | Muc6
Description
mucin 6, gastric [Source:MGI Symbol;Acc:MGI:2663233]
Coordinates
chr7:148828605-148829207:-
Coord C1 exon
chr7:148829145-148829207
Coord A exon
chr7:148828641-148829144
Coord C2 exon
chr7:148828605-148828640
Length
504 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TACCTGCCCTTCTCTTACAGCAC
3' ss Score
11.2
Exon sequences
Seq C1 exon
GCTGTTACAACTGCTCCCAGAATGAGTACTTCGACCACAGTGAAGGGACCTGTGTACCCTGTG
Seq A exon
GTAAGTCCAGCAGATGCTCTCACCACCAGCTAGCACGGCCCTTGGATAGCATGTGTCTGGAGCCTGTCCAGCCCTAGTAACTCCTTCCTAGATCCTCTCTCTCAGGGCACTGACATACTGGCTCAAACAGTGTCCTAGGATACCACAGAAACAAAAATGCAGTGTTGGACCCCTTGGCCTCTGCTCTATTCCCCAGCCCAGCCACTACTTAGCCACAACCTTACGGCAGAATGCCCCACACCAGGAACATAGCACAGTACATATGAAGGACTATAAGCTTAAATAGAAGAGCCAGGGTACTTGGATAAACAATGGGAATTTTCTTAGGAACCCAGCCCTACACATTGGCATGATACCAGCCTGGCCATGGCACCTTGACTGGCCCCCTACTCTCCCTGCTAGGCTGACAAAGAAGAGAGGGAAAGAGGCAGGAGAGGGGTGGGCCAGGCGGGGGAGAAGATTCATAGGTGGCTATCCCTGACAATACCTGCCCTTCTCTTACAG
Seq C2 exon
CACCACCCACTACCACACTACCGCCAACCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048191-Muc6:NM_181729:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: