RnoINT0095777 @ rn6
Intron Retention
Gene
ENSRNOG00000056817 | Muc6
Description
mucin 6, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:628826]
Coordinates
chr1:214617161-214618238:-
Coord C1 exon
chr1:214618163-214618238
Coord A exon
chr1:214617364-214618162
Coord C2 exon
chr1:214617161-214617363
Length
799 bp
Sequences
Splice sites
5' ss Seq
CAGGCACTC
5' ss Score
-0.71
3' ss Seq
GCCAGATTCTGCCCATCCATGAG
3' ss Score
-4.52
Exon sequences
Seq C1 exon
GCTGTTACAACTGCTCCCAGAATGAGTACTTCGACCACAAAGAAGGGACCTGTGTACCCTGTGGTAAGTCCAGCAG
Seq A exon
GCACTCCCACGACCAGCCCTTGTGTGGGCAGCCTGTGTCTCAAGCTTGTCCAGGCCTAGTAACTCCTTCCTAGATCCTCTCCCTCAGGACACTGACACAATGGCTCAAACAGAATCCTAGGCCACAGCAGAAACAAAAACGCAGTGCTGGACCCCTTGGTCTCTGCCCTATTCCCCAGCCCAGCCACTACATACCCACAGCCAGAGTGCCCCACACCAGCCAGGGTACTTGGATACACAGTGGGAATTTTCTTATGAACCCAGCCCTAGATCCCTACTCTCCCTACAAGGCTGACAAAGAAGAGAGGGAAAGAGGCAGGGGTGGGGAGGGCCAGTCAGGGGAGAAGCTTCATACACAGCTATCCCTGACAACGCCTGCCCTTCTCTTACAGCACCACCTACTACCACACCACCACCAACCACCACAGGTGATTGCTCACCCACTTGGTACCACAGGATGAAGGCTTCCTGCCCAGGGCTCACCCTAGCTCCAGTGGACAGCCCTCCCCACCCCACCAGCCCAGCTTCTACATCTGCCAGGCCCTGGGAGGGTGGGTAATGTACCCTGCAAGCCCTAGGTTACAAGGGAAAGAACTTACAAAGCTTAGCTTCTGGCCAGCCATTGATGGTGGCCACTTGACTCACCTGACTGAGCAGGAAGCAGGGCCTCACCAGGTAAGTCTCCCAGGAGTCCACGCTGCCTTCAGAGGTCCATGAGCCACCCTATACCTTTTTGCCTCCCCCCCTCACGAGCTCTTCCCGGGATGGGGGAGCTCTGGAGCCAGATTCTGCCCATCCAT
Seq C2 exon
GAGATCACATATGCTCTATACAGGTTCACAGCCTACTACTGCAACCCCCATCAGCACCGAGTTCCACAGTTCCAGCTCTACAAGCACACCTGTGGGCCCCTCCTACTTGCCAGGTCTTCCAACCCCACCGCCTTCAGCCCCATCCTCCACTGAGGAAGGAACAGACTGGACCACTCCAAAGAAATCCACAGTCTCCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056817:ENSRNOT00000087497:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTACAACTGCTCCCAGA
R:
TCCTGAGGAGACTGTGGATTTCT
Band lengths:
278-1077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]