GgaINT0057281 @ galGal4
Intron Retention
Gene
ENSGALG00000020492 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr5:14445260-14447006:+
Coord C1 exon
chr5:14445260-14445322
Coord A exon
chr5:14445323-14446835
Coord C2 exon
chr5:14446836-14447006
Length
1513 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTTTTTCCTCTTAGTAACAGCAA
3' ss Score
1.19
Exon sequences
Seq C1 exon
GCTGTTACAACTGCTCTCATGATGAATATTTTGACTATGAGAAAGAAAAATGCATGCCATGTG
Seq A exon
GTAAGTAGAACCCTGTACGCTCATCCTCTTTCTTTACAGTAGCTAAAACCTTTGAGTGTTGACCAAGAAGATATTTTCCGTAGTTACTTCTCAGTTAATGACGAGTGTTCATCCCTGTATAACTTTTCTTCAAGATAATCTTATTGTTGTACTATTAGTATGTAAAATTAGTAGACTTTACTTAGCTATTCCCTGTAAGTTCTGTGGGTTTTTAAAATTATTTTAACTTAAGATTTATTACCGTATGGTGTCCTACTCTGTAAACCTTTCATAGTAAATAATGTTGTGGATGGACTCCAGCTGCACAATTTGGATTTCCATGAATATGTGAAATTACAAAAAAACACCTCAATTACAATTGTTTATTTCATTTAACAGAATTCTTACTTGTGAAACCAGAATTTCAGCTATTGATCTCATTTACACTCAAAAAAACATTTCTATTATCCCTGGAAAGTGAAGTGCCGTTAAGCATAAAACTCATAAGAAAGACAGGAGAAACGTGCTCATGTTTATTTGTATTGTGAGTTGTATTAATTTTTTCATTATTTTTTTAAGTACTTTCATACGAAGCTTACCACTGAAATACGTAGTAACAAGGATTTTCAGGATTATCACACTAATTAGCACAATCCTTTAAAAAGACTTTATTGTTCTTCCAATCTGAAATTTGCCTTATTTGGAATATTCTTAATGCAATTCCAACTAAGAATTTAACCTGTTCTACTTTTATGTCCCAGGAGATGAAAGTATTAGTACTACACCTGAAACTTCTTCACCTTCAACAGGTTAGTTTAAGCAGTTGATTGAACAAGTACTTACTCACTGATGTATGTCCTGATATGTGTTTCTGAGATGAGAAGTATCCTTTTTTTGCTTGATATAATGGCATCATCAGTTTTTAATGCATAAGATGCAATAACAAAATGTCAGTATCATAATTATCACAAAAAATTCCCAGAAATATTTGTGTACACTGAGGCACTTCCAGATATTAGTAATGAAATTTCTTTGTTTGTGAATATGGATTTCTGTCTTCTCCCTGATAGACAAAATCACACAAAATTTTCACTACAATTTTAAATGGTGATTGGCTTTATAACACTTAACAGTTTAGGATGGGGGTCTTGGAAGCTCATGACCAAGTACATCAAGCCTCAGTAGCCTGATCCAGGAAAGAAACCTGTATTTACTGATCTTTGTTAGCAATTTCTTTACTTTCATTAATGAAAATGAGAGTTATTGGGAAAAAGGTACAGTGGTGGCTTTCTGAATAAAGCTTCTGCAAGAATCCCTATTCAATGTATTCACTGCAAATAACAATAAAGGAATAGATCGGTGAATTTTCTTAAGTATTTTGTTTGAAATTAAGGTAGGAGATATTTTCAGTTGTTACTACTGGTAATAGTTTTTCATTCTAAAAATAATTTACAATTTCTATAGGAATATTTCAATAGATTATGAATAATTATTTCTTATCCTCTGATTTTGATTTTTTTCCTCTTAGTAACAG
Seq C2 exon
CAATGCAGCCTACTTCAGTCACATTACCCACAGCTACCCAACCAACATCACCTAGCACTTCTTCTGCATCTACTGTACTGACTGAGACCACAAATCCACCTGTAACCTCAAAAATCACAGTCTCAAGAACTTCATCATCATCACCTCTTGTCACAATAAAATCAACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020492:ENSGALT00000032694:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.552
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTACAACTGCTCTCATGA
R:
TGTTGATTTTATTGTGACAAGAGGTG
Band lengths:
230-1743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]