GgaINT0057520 @ galGal3
Intron Retention
Gene
ENSGALG00000003516 | TCIRG1
Description
NA
Coordinates
chr5:95289-95577:+
Coord C1 exon
chr5:95289-95371
Coord A exon
chr5:95372-95483
Coord C2 exon
chr5:95484-95577
Length
112 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCAATGTCCATCTGTCCCAGCTT
3' ss Score
4.01
Exon sequences
Seq C1 exon
GGTGAGAGCGTCACCTGGGTCATCTTCCTCATCTCCTACTGGGGAGAGCAGATCGGGCAGAAGATCCACAAGATCTCAGACTG
Seq A exon
GTGAGTGAGCAGCCCCACGTCATTTGGACAAATGGAAAAGGTTTATTTAGTGAGACCCGCTGCGGTACCAGGGAGCACCAGCCTTCAACACGGCAATGTCCATCTGTCCCAG
Seq C2 exon
CTTCCACTGCCACGTGTACCCCTACCCGGAGAGCGAGGCCAGCCGGGCCGACACGCTGAATGGGCTTCTCAGCCAGATCCAGGACCTCAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003516:ENSGALT00000005558:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(6.1=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGTCACCTGGGTCATC
R:
CTGAGGTCCTGGATCTGGCTG
Band lengths:
170-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]