HsaINT0165069 @ hg38
Intron Retention
Gene
ENSG00000110719 | TCIRG1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr11:68043571-68043907:+
Coord C1 exon
chr11:68043571-68043653
Coord A exon
chr11:68043654-68043813
Coord C2 exon
chr11:68043814-68043907
Length
160 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCAGCGCATCCTCCCTCCAGCTT
3' ss Score
5.81
Exon sequences
Seq C1 exon
GGCGAGCCAGCCACGTGGATGACCTTCCTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGCAAGATCACGGACTG
Seq A exon
GTGAGTCACTGGGAACACCCGCCCCACCGCCCTGCTCCCCAGGCCCCTGCTGTCACCTCCCAGCCCGCCCTATCGTGACTCCTCCCCATGAGCTCCCTTCAGACTCAGAGTCTCGTAGCTGTGTCCTTCTGGCCCCTCACGCAGCGCATCCTCCCTCCAG
Seq C2 exon
CTTCCACTGCCACGTCTTCCCGTTTCTGCAGCAGGAGGAGGCCCGCCTCGGGGCCCTGCAGCAGCTGCAACAGCAGAGCCAGGAGCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719:ENST00000265686:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(15.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCAGCCACGTGGAT
R:
CTCCTGGCTCTGCTGTTGC
Band lengths:
166-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains