RnoINT0148877 @ rn6
Intron Retention
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219135048-219135409:-
Coord C1 exon
chr1:219135327-219135409
Coord A exon
chr1:219135142-219135326
Coord C2 exon
chr1:219135048-219135141
Length
185 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
ACTACCCCATCTTTCCTCAGCTT
3' ss Score
8
Exon sequences
Seq C1 exon
GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGGTTCGGAAGATCACAGACTG
Seq A exon
GTGAGCCACAAGTGCAGGGTCCCTTGGCCACTGCAGGTGTCCAACCTATAGCCACTTCAGGCTCCCAGATAGATATTACTGGTCCCGGGTGGCCCAGGCCCCTGATAACACCGTCACCAAGTTTGTCCTGCCCTCAGCTCTTCCTGGTTATTTCCACTGACCTGCACTACCCCATCTTTCCTCAG
Seq C2 exon
CTTTCACTGTCATGTCTTCCCGTACCTGGAGCAGGAGGAAGCCCGGCTCAGGACCTTGCAGCAGCTGCAGCAGCAGAGCCAGGAGCTTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220:ENSRNOT00000023425:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCTGCAACTTGGATGAC
R:
CTCCTGGCTCTGCTGCTG
Band lengths:
166-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]