GgaINT0057638 @ galGal3
Intron Retention
Gene
ENSGALG00000009474 | ACTN1_CHICK
Description
NA
Coordinates
chr5:30556483-30557747:+
Coord C1 exon
chr5:30556483-30556570
Coord A exon
chr5:30556571-30557668
Coord C2 exon
chr5:30557669-30557747
Length
1098 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTTCTGTCTCTCTCACAGTTG
3' ss Score
11.45
Exon sequences
Seq C1 exon
AGACATCTGCTAAAGAAGGACTTTTGTTATGGTGTCAGAGGAAGACAGCTCCCTACAAAAATGTAAACATCCAGAACTTCCATATCAG
Seq A exon
GTGAGAACAGGCAAGAACTCAGCTTTACCATCTGTGTCATTTTTGCTACATTCAATGATGTTCCTGATGCAACTGCATTTCTTTGGGAGGTCTGTATTACACAGTAACAAAGTAGTCCAGAGAGACAGGTAGGAAATTAAAAGCAGAGGTTATAGGATGATCCAAGTACCAACGTCCCAATTCCTCATTCCAGTTACAAGTGCTGCTTTTGTAAACTCTAAAGTATGAAGTCCCGTGAAAGCATCATATATATAACAGGCTAAGCAAGACAGCTTTTACCTTAGAAGCCTTGAAGTAAGGCCTTCTTAAATCCTTATTTCATCAGAAAATTTTTAGTATAGTAGAGTTGGAAAGGAATGAGAGATTTTCTTGTTCTGCTTTTAGTATTTGTAAACTGACAGGTGTTTAGTAAAGATTCTGTGTAATAGTGCTTTTGCCAGCACATCTTTGAGCACTGATGAATCATATAAATGTAAAGCTTTTATTTTTTTTTGAGAGCTTAAGTTCTGTCCACATCAGTCAGTGCTGTAGTGAACCTTGCTATGGACTTGCCTTAAGTCTTATATCTGAGTGCACAAGTGCCTCTGAGAAAAGCAAGGGGATTGGTGTCTCACATCCCAGATTAGTTGATGAAGTCTTTAGGTTCAGTAAATTGTAAGAAACAATCCTACTAATTGAAATGAGGAATTCTGGTTCCAGTTCTTCTCAAAAGTCCAGTCTAGGCTGGGAGGCAAAGCATTGGCTTGTACAGTGCTGGTTATAGCCATGAGTAGTCATTCCCCTGCTCCTCAGTCTGCCTTTTCCTATGGCCTTTTTTCAAGCTCTGTACCTGTTCTTGCATGCTCCCCAGGATAGCAGACATTCAGAGCAGAGAGCTGGCATAAAGGACATGACAGTGCAAAGGGCAAGTCCTAATTGCATCAAATTATTGTAGAAAAGAAAGAGGAAAGAAATCCTTTCCAGCACTTAGAGAGACACTGCTAGCTAGAAACTAAACCGTGATTAATCATCCTCGTGTCTTCCCTCATGCTCCTGCCCATCACTGTGTCTCTCCCAGGCTGAGCCTGCTCAATTTGCCCTCTTCTGTCTCTCTCACAG
Seq C2 exon
TTGGAAAGATGGCCTTGGTTTCTGCGCTTTAATTCACAGACATCGTCCAGAGCTCATTGATTACGGGAAGCTACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474:ENSGALT00000015425:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(24.0=83.3)
A:
NA
C2:
PF0030726=CH=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]