RnoINT0012601 @ rn6
Intron Retention
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103405070-103405685:-
Coord C1 exon
chr6:103405598-103405685
Coord A exon
chr6:103405149-103405597
Coord C2 exon
chr6:103405070-103405148
Length
449 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCTCTCTCTCCCTGGACAGTTG
3' ss Score
11.46
Exon sequences
Seq C1 exon
AGACATCAGCTAAAGAAGGGTTGCTCCTGTGGTGTCAGAGGAAGACAGCCCCATATAAAAATGTCAACATCCAAAACTTCCACATCAG
Seq A exon
GTGAGTGCTGGAGCCAGGGGGTCACATGGAGGCTGGCCTGCCTCCTTAGGGCATCTCATGACCTACCCTTGGCTGGAAGAGTTGGGGGGGGGGCTTATAGTTCTTCTTGGGAAGGTTCTGTCCCTTTGAATCTGCCATCCCTCCCTGTGGTGTCTTAAACCTGACTACTGCCTGGCACACCTCTGTTGGAATTTGTGACACTGGGAAGACCCCCAGGACTGTGTCAGAAAGCCCAGGGTTCTAGACCAACAGGCTAAGACTTTAGCAAGGGGGTTGGGTGGGTATGGTGGATTCATCTCAATTTGCCAACCACTCAAAAAGCTCGACCCCAATACCTGGGAATGTGGCAGGCAGAGAACTCCCTTTCTATCCCTGTCTTCTAAATCATGCTTCAAAGAACTGTTTAATAAACATTAGAAGTCATGCTCCACCTCTCTCTCCCTGGACAG
Seq C2 exon
TTGGAAGGATGGTCTTGGTTTCTGTGCCTTGATCCACCGGCACCGGCCCGAGTTGATTGACTATGGAAAGCTTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756:ENSRNOT00000079824:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(24.0=83.3)
A:
NA
C2:
PF0030726=CH=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]