GgaINT0057638 @ galGal4
Intron Retention
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27540674-27541895:+
Coord C1 exon
chr5:27540674-27540718
Coord A exon
chr5:27540719-27541816
Coord C2 exon
chr5:27541817-27541895
Length
1098 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTTCTGTCTCTCTCACAGTTG
3' ss Score
11.45
Exon sequences
Seq C1 exon
GACAGCTCCCTACAAAAATGTAAACATCCAGAACTTCCATATCAG
Seq A exon
GTGAGAACAGGCAAGAACTCAGCTTTACCATCTGTGTCATTTTTGCTACATTCAATGATGTTCCTGATGCAACTGCATTTCTTTGGGAGGTCTGTATTACACAGTAACAAAGTAGTCCAGAGAGACAGGTAGGAAATTAAAAGCAGAGGTTATAGGATGATCCAAGTACCAACGTCCCAATTCCTCATTCCAGTTACAAGTGCTGCTTTTGTAAACTCTAAAGTATGAAGTCCCGTGAAAGCATCATATATATAACAGGCTAAGCAAGACAGCTTTTACCTTAGAAGCCTTGAAGTAAGGCCTTCTTAAATCCTTATTTCATCAGAAAATTTTTAGTATAGTAGAGTTGGAAAGGAATGAGAGATTTTCTTGTTCTGCTTTTAGTATTTGTAAACTGACAGGTGTTTAGTAAAGATTCTGTGTAATAGTGCTTTTGCCAGCACATCTTTGAGCACTGATGAATCATATAAATGTAAAGCTTTTATTTTTTTTTGAGAGCTTAAGTTCTGTCCACATCAGTCAGTGCTGTAGTGAACCTTGCTATGGACTTGCCTTAAGTCTTATATCTGAGTGCACAAGTGCCTCTGAGAAAAGCAAGGGGATTGGTGTCTCACATCCCAGATTAGTTGATGAAGTCTTTAGGTTCAGTAAATTGTAAGAAACAATCCTACTAATTGAAATGAGGAATTCTGGTTCCAGTTCTTCTCAAAAGTCCAGTCTAGGCTGGGAGGCAAAGCATTGGCTTGTACAGTGCTGGTTATAGCCATGAGTAGTCATTCCCCTGCTCCTCAGTCTGCCTTTTCCTATGGCCTTTTTTCAAGCTCTGTACCTGTTCTTGCATGCTCCCCAGGATAGCAGACATTCAGAGCAGAGAGCTGGCATAAAGGACATGACAGTGCAAAGGGCAAGTCCTAATTGCATCAAATTATTGTAGAAAAGAAAGAGGAAAGAAATCCTTTCCAGCACTTAGAGAGACACTGCTAGCTAGAAACTAAACCGTGATTAATCATCCTCGTGTCTTCCCTCATGCTCCTGCCCATCACTGTGTCTCTCCCAGGCTGAGCCTGCTCAATTTGCCCTCTTCTGTCTCTCTCACAG
Seq C2 exon
TTGGAAAGATGGCCTTGGTTTCTGCGCTTTAATTCACAGACATCGTCCAGAGCTCATTGATTACGGGAAGCTACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474:ENSGALT00000038021:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0030726=CH=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]