GgaINT0057652 @ galGal3
Intron Retention
Gene
ENSGALG00000009474 | ACTN1_CHICK
Description
NA
Coordinates
chr5:30585597-30587900:+
Coord C1 exon
chr5:30585597-30585677
Coord A exon
chr5:30585678-30587741
Coord C2 exon
chr5:30587742-30587900
Length
2064 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ATGACTCTCTTGTTCTCCAGGGA
3' ss Score
10.02
Exon sequences
Seq C1 exon
GACCACTCCGGCACACTTGGCCCTGAGGAATTCAAAGCCTGTCTCATCAGCTTGGGTTACGATATTGGAAACGATGCACAG
Seq A exon
GTACTGAATGCTAGTGGTGAACACACACAGATATTAAGCTATGAAAAAATAACGTTTTTTTTCCCCTTTCTTTTCTTGTTTGTCTTAATGTATTTGTCACTGCTGTTCTTGTGTTTGACTATATATGCATCACTTTTCTGTTCTACTTTACCTCTAAATGTACCTTGGTATCTATCCCTTCTTAATTCTGTAATGGTTTGTCTTGTGGGAATTCCTTTTATGTCTTTAAACTATTCCATTTACTTCTGTGTCACTTAACACTCCTTCTCTTGTCCATCTCTCACTATGTCTTGCTTAATATCTTCTGCTTTTTCATCATTGTTTTCCATGTGTGCTAACTATCCTGTGTCCAAAACAACTTTTACATCATGGTTTCACAAACTACCTTTGCTACGTTGTTTTTCATTGTCCTGTAAATACTTTTTTCCACCTCCTCCTCCTTAAAACTCATTCTCTGTCATGTCTCATGTGGGTTCATTTCTCTCTGGACTGGTCTTCCTTTTCTCTCTTGGCTGTTTCCATCTTTGCATCATTCTCTGTAGAAGAAGACTGGTATGATGGATTGTGAAGATTTCCGAGCCTGCCTTATCTCCATGGGTTACAATATGGTAATGTAGAGCCCTCTATCACTTCTGTTCAAAGTGATTCTTATAGCCACCTTCAGAAAGAAAGGGAGAATGTGTAGTGAGTGAGTCAAGGTAAATACGATCTTATTTTCCAGCAATTGAAGTTCAATCCAGTACATGTAAAATTGTCCTGCAGCAGTAGCTGCAGATTAAAAAAAAAAGATATCATTGTCTTCATTCTTTGTATTTCAAATAAGAGTTATATTTATCAAACTGTGCAGCAACAAGTGGAAGAAACAATGAACTTTCTTATAGTGGTGCATATGCTCTACATAGTGGCACATAAGTTCCCCAGACCTAAGCATCAATTGAACTCTTCTGGAAGCCTGATTTCTGAATACATTCAAAGTTGCTCCTCACATTCCTGCCATTTATTTCACATCTCTTTGTTCATGTAAGTAGGTTAAAGTTCCAGTCATCCTCCCTGTAGCTTTTCCCTCACCAAAGCACTTGCACATTCGTGTGGCACCTTGAGAATCACCGTAACTAATGCAGAGTTTCCCCAAAGACTGACATTCATCAAAGGGCAGGAGAAGACCACAGTGCAAAAATGTTGAGCTCTACTCTCAGTATCTTTGCTCCCAATGTCAAGCAAAGCAGTGTTTGTTTGTCTTCATTATCAACCCAGTGTAAACACAGACACTTTTTGATGCTGTGTGCCAATCTGCAGTAACATTTGATGAGATACTTCAATTAATCTGGAAGGTATACTGATCTAGAGGTGTTAGAAAAGCATATACCCAGGAGGATACTCAGCTCTGCTTTCCTCTCCTCCTTACCTGGGGAGAAAGGAATCCCCACAGATGAGAATAGATAATATTTTGTTTATATAAAGAAGACAAACAAAAAAATAAAAACCTACAGAAAACCAGAAAACTCACAACACAGTTTTGCCTTCTGTAGTAAACTTATATGTAGAACCCTTCCTGTAAAAGCTACTTCCCTGATGTAGAAGTCCTTTTCTCTAAAGCCTATCTAGTTAGAATAACCAGATAACATTCAAGGCCCCAGAGAGGTTTCTGCTGGTGGATTCTGTTCTAGCAGCAGAAGAGAACCATGAAAGTTTAGGAAATAAAAGGATGTAACGAATGCAGATCTTCCAGTATTGCTACAGACATCTAGCACAACATCTATGACAGAGAAAGCTGCATCTTCCCCTCAAGTCTGTACGATATTGTTCCCTAGATTATCCTAGAGCTAGCTGGAGTTGGATGCTATCTTAGGCCACAACTGAGAATATTTTATTCCAAAGGACAAATGAGTAGGAAGCATTTGCACACAGCAGCCAGATAAAAAAGAGTATTTTAATGAAAGGTTGAAGTTGTTTCTGTTTGACTTTGCTTTCCCAGCTGTGAGATGTGCTGCTGAACATTTTCTCCTCGCTTTCATGGCACTGCTGCCCAAGTGTCCAGGCTTACATGACTCTCTTGTTCTCCAG
Seq C2 exon
GGAGAGGCAGAGTTTGCCCGCATCATGAGCATTGTCGATCCTAATCGCATGGGTGTAGTGACGTTCCAGGCCTTCATTGACTTCATGTCCCGGGAAACAGCAGATACAGATACTGCTGACCAGGTTATGGCTTCTTTCAAGATCCTGGCTGGAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474:ENSGALT00000015425:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(30.6=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(35.0=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]