DreINT0025685 @ danRer10
Intron Retention
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36197797-36201004:-
Coord C1 exon
chr13:36200924-36201004
Coord A exon
chr13:36197956-36200923
Coord C2 exon
chr13:36197797-36197955
Length
2968 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
AATGTTTCTCTGTTGTGTAGGGA
3' ss Score
7.49
Exon sequences
Seq C1 exon
GACCACTCGGGCACTCTGGGCGCTGAGGAGTTCAAAGCCTGCCTTATCAGTCTGGGCTTCGATATCGGGAACGACGCTCAG
Seq A exon
GTACACACACACCCACAGCAGATGCGGAGATCAGCCATTAACCAACATTTCTTTTGTTTTCCCTTTCTACTTTCGCTTTTCTTTCAAACTTTTCTCTGAAATGACTTTCCTCATCTGTACTCGCTCTGCTCTACTGGTTGTGTTTGTCCCTCGTGGGCTCCTGTAGAAGAGAACAGGCATGATGGATGCTGAAGACTTCAGAGCCTGCCTCATCTCCATGGGTTATAATATGGTAAAGCAGAGTATTGGAAATCTTCATGGTTTGTGATCAGGGTAAAGGTTTGATAATGAACTCAGGGTTCATGGAATATCTGGAATATCAAGGAATTTTAAAAAGTCTATTCCAGACATTAGGTGCGTCCCAAATTGCATACTTGTGCACTATTCTATGCAGTTTTGTAATAGAAATAGTAATGCATTCACACTGGAAATTCTAAAAAAGAATAAGTTAAAAAATGTGGAATGTTGAACATTTTACACACTTAACGCTTGCTGTTTTGTTCACACCGTGGAAAGAGAGGTGCTATTGGATTTCTTTATTTATTTTGGATTCTTCATGCAAAATTCTTCTACATAAGTTATTATGCCACCTCCCGATGGTGAATGCAGATGTACTCATGACCGGTAGTATTTGATCGTTTGGTCATTTATTTAAACGTTGCCTTGGAAATGGTTTGAATTTTCATTGAGTAAAAAAAAAAACATAAGTGTTTCCTTTGGAACGACACTAAACTCTTCACTACACGGCTAAGTGTGTTAATATAGAGCAGCAGTGTCTAAACTCGGTCCTGGAGGGCCAGTGTTCTGCATAGTTTAGCTCCTACTTCCTTCAACACAAGCTGCCTGGAAGTTTCTAGTATATCTAGAAAGAGCTTGATTAGCTGGTTCAGGTGTGTCTAATTGGAGTTGGAACTACACTTTGCAGAACACCAGCCCTCCAGGCAATAGTATCTGGATGCAGCCTTTATGATGCAAGCTGAGATTGCATCACTCAGCGATGCAATGTCAGACACAATGCACTCTATGAAGTGAGTGACGTCACTGTGACGGGTAGGGTTAGGGGTGGGGTTAGGTGAGAGCATTAAAAAGCATTGGATGCAGTGCAGATTGCAGTGCACCAGGCCTGCATCCAGACCCCTCTCCCTTAAGGGCTGAATTTGGGCACTCTTGAGCTGCATTCGGAACTGTATACTTCTTTACTATATAGTACACTAAAATCAGTATGTGAGCCGAGTAGTATGTCCTGAAATCAAAGAATTCGAAAATAAGTATTCGAGAAGTATCTAGATAACCTACTACTTCCGGCGAGATTCTAAAGTGCGCATTCCATGCACGCTGCGCTATCCCATGATGCCCCGCGAGAGAATTCATGAATGGGAGTGAAGCGATCTAATCTCAAATCTGGTAAAAACATTTTTGGGAAGTGATATCTAAGTATTCCTGGTTTTAAAAAGTAACACCAGTTTATTGATTTTAATTTAATTTAAATTTTTTTTTTTCCAATTTTACATGAATATATATATTTTTATTTCTTAGCCTTCCCTGTTTTCCCCTGTGAATTCCCGGACTCCAGTTTCAGCCCCCTGAATGAGACTATTATGATCTCTAATCTTTTTAAAAACATTACTTAAAAAGTGTTAAGCATCATTATATAATGTTATATGTTCTCTAATGTTAAGTATTCTTGGTTTAATCCCTTATAGATCACTATTTAAAATACTCAGTGGAAAAAATTGTGTAATTGGGAGTTATTATGAGACTTTTTAATTTTCATAATTTAAAAAAATTATTAATTATACAGTCCTCAGCATATAAAAATACACCCCTCACAAATCTCTCTTTTAAATTCATATTTTAATAGTAAGCTTTACAATATTATCTATTGCAGTGGTTCTCAAACTGTGGTACGTGTACCACTAGTGGTACGCAGGCTTCCTTCTAGTGGTACGCGGAGGAATGAAATATGTCATGTACATGCTACACACATTTAAAAATTTATCAAAAATGATGAATATAATATGCCGTTTATGACATATAGCCTATATTTCTGAGGTAATCTGCCACGTTTTTTTAACTGTGCAGAGTTGTAGCTGCTTTTCTGGGCCTACTACGGTACTGTATTTCAATACTGCTAATTTTTGGTGGTACTTGGAGAGACAATTTTTTTCTGAGGTGGTACTTGACAAAAAAAAGTTTGAGATCCACTGATCTATTGTATTATGTATTATAGTGCATATACATTAGATTAGTTAGTACTGAAGCCAAATCTGGAGCTTATATAAACAAAATAACTTACGATAACAGTCCAAATACTAGCACACCCAAATATATATGTTATAGAAAAATATGAAATACAAATTTTAAAAAATATGAAGTGGCTCAAGATCTTGTTGAAATTTGTAGGTTGTAAGTTTTTTTTTTCAATATTTTGCGTGAATTTAATTGGATTATTTTCGATTTCTAAATTTGTTTAGTGACTAAAATGAGATTTATATATATATGTATATATATATATATATATATATATATGTATATATATATATATATATATGTATGTATGTATGTATATATATATATATATATATATATATATATGTATATATATATATATATATATATGTATATGTATATATATATATATATATGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAAATCTGTTTTGTTTAAATGCACCAAAATACGCTGCCTATATTCACTGAGAAATGGATAAAAATATTCATTTTCAAAATGGGGTGTACTCAATTATGCTGAGCCCTGTATATATGTGTATAAATATATAGTAATCAATGTCAATTAAGTTACCATATATAGTTCTTCTCTCAATGAAGATTAAATATAAAGATCATTGATGAACAACCTTTCCCATTGTCTGCTTGGACCACTACTGAGAAATGTTTCTCTGTTGTGTAG
Seq C2 exon
GGAGAGGCGGAGTTTGCTCGCATCATGAGCATCGTGGATCCCAACAGACTGGGAGTCGTCACATTCCAGGCCTTCATTGACTTCATGTCCCGCGAAACGGCTGACACGGACACTGCAGATCAGGTCATGGCATCATTTAAAGTCCTCGCTGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219:ENSDART00000140243:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(30.2=100)
A:
NA
C2:
PF077816=Reovirus_Mu2=FE(32.1=100),PF0152612=DDE_Tnp_Tn3=PD(51.8=83.0),PF138331=EF-hand_8=PD(58.5=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]