DreEX0010933 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36197797-36204881:-
Coord C1 exon
chr13:36204735-36204881
Coord A exon
chr13:36200692-36200757
Coord C2 exon
chr13:36197797-36197955
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCCCTCGTGGGCTCCTGTAGAAG
3' ss Score
5.18
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
Exon sequences
Seq C1 exon
CACATCCGTGTGGGTTGGGAGCAGCTCCTCACCACCATCGCTCGCACCATTAATGAGATTGAAAACCAGATCCTGACACGTGACGCCAAAGGCATCAGCCAGGAGCAAATGAATGAGTTCAGAGCCTCGTTCAACCACTTCGACCGA
Seq A exon
AAGAGAACAGGCATGATGGATGCTGAAGACTTCAGAGCCTGCCTCATCTCCATGGGTTATAATATG
Seq C2 exon
GGAGAGGCGGAGTTTGCTCGCATCATGAGCATCGTGGATCCCAACAGACTGGGAGTCGTCACATTCCAGGCCTTCATTGACTTCATGTCCCGCGAAACGGCTGACACGGACACTGCAGATCAGGTCATGGCATCATTTAAAGTCCTCGCTGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(38.2=42.9),PF077816=Reovirus_Mu2=FE(29.6=100),PF0152612=DDE_Tnp_Tn3=PU(20.0=34.7)
A:
PF077816=Reovirus_Mu2=FE(13.0=100),PF0152612=DDE_Tnp_Tn3=FE(24.7=100),PF138331=EF-hand_8=PU(37.7=90.9)
C2:
PF077816=Reovirus_Mu2=FE(32.1=100),PF0152612=DDE_Tnp_Tn3=PD(51.8=83.0),PF138331=EF-hand_8=PD(58.5=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATCGCTCGCACCATTAA
R:
TGTGACGACTCCCAGTCTGTT
Band lengths:
178-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]