BtaEX0002286 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81025733-81028787:-
Coord C1 exon
chr10:81028641-81028787
Coord A exon
chr10:81027036-81027101
Coord C2 exon
chr10:81025733-81025891
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGGTGCCCCTTGCCCCACAGAAG
3' ss Score
8.43
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
CACATCCGTGTGGGCTGGGAGCAGCTCCTAACCACCATCGCCAGGACCATCAATGAGGTGGAGAACCAGATCCTGACCAGGGATGCCAAGGGCATCAGCCAGGAGCAGATGAATGAGTTCCGGGCCTCCTTCAACCACTTTGACCGG
Seq A exon
AAGAAGACAGGCATGATGGACACGGATGATTTCCGCGCCTGCCTTATCTCCATGGGTTACAACATG
Seq C2 exon
GGAGAGGCAGAGTTTGCCCGCATCATGAGCATCGTGGACCCCAACCGCCTGGGGGTGGTGACGTTCCAGGCCTTCATCGACTTTATGTCTCGTGAGACAGCTGATACAGATACAGCAGACCAAGTCATGGCTTCCTTCAAGATCCTGGCCGGGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF134991=EF-hand_7=PU(32.1=55.1)
A:
NA
C2:
PF134991=EF-hand_7=PD(33.3=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTCCTTCAACCACTTTG
R:
GCCAGGATCTTGAAGGAAGCC
Band lengths:
175-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development