RnoEX0006342 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103378008-103381005:-
Coord C1 exon
chr6:103380859-103381005
Coord A exon
chr6:103379314-103379379
Coord C2 exon
chr6:103378008-103378166
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTTGGCACCACTGCCCACAGAAG
3' ss Score
4.5
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
CACATCCGTGTGGGCTGGGAGCAGCTGCTCACCACCATTGCCAGGACCATCAATGAAGTGGAGAACCAGATCTTGACCCGGGATGCCAAAGGCATCAGCCAGGAACAGATGAACGAATTCCGAGCCTCCTTCAACCACTTTGACCGG
Seq A exon
AAGAAGACGGGCATGATGGACACGGATGATTTCCGCGCCTGCCTTATCTCCATGGGTTACAACATG
Seq C2 exon
GGAGAGGCAGAATTTGCCCGGATCATGAGCATTGTAGACCCAAACCGCTTGGGGGTAGTGACGTTCCAGGCCTTCATCGACTTCATGTCCCGAGAGACGGCTGACACAGATACAGCGGATCAGGTCATGGCTTCCTTCAAGATCCTGGCTGGAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756_MULTIEX1-2/2=C1-C2
Average complexity
ME(1-2[91=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF0003627=EF-hand_1=PU(34.5=20.4)
A:
PF138331=EF-hand_8=PU(37.7=90.9)
C2:
PF138331=EF-hand_8=PD(58.5=58.5),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGATCTTGACCCGGGAT
R:
TGAAGTCGATGAAGGCCTGGA
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]