GgaEX0013984 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27566823-27571230:+
Coord C1 exon
chr5:27566823-27566969
Coord A exon
chr5:27569550-27569615
Coord C2 exon
chr5:27571072-27571230
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTTTGCATCATTCTCTGTAGAAG
3' ss Score
7.27
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
CATATTCGTGTGGGCTGGGAGCAGCTATTAACAACAATTGCTAGAACCATTAATGAAGTGGAAAACCAGATTCTGACCCGTGATGCCAAAGGAATAAGCCAGGAACAGATGAATGAGTTCCGAGCCTCTTTCAACCATTTTGACAGG
Seq A exon
AAGAAGACTGGTATGATGGATTGTGAAGATTTCCGAGCCTGCCTTATCTCCATGGGTTACAATATG
Seq C2 exon
GGAGAGGCAGAGTTTGCCCGCATCATGAGCATTGTCGATCCTAATCGCATGGGTGTAGTGACGTTCCAGGCCTTCATTGACTTCATGTCCCGGGAAACAGCAGATACAGATACTGCTGACCAGGTTATGGCTTCTTTCAAGATCCTGGCTGGAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474_MULTIEX2-2/2=C1-C2
Average complexity
ME(1-2[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF088696=XisI=PD(31.9=44.9),PF134991=EF-hand_7=PU(32.9=57.1)
A:
PF134991=EF-hand_7=FE(26.2=100)
C2:
PF134991=EF-hand_7=PD(32.9=52.8),PF087265=EFhand_Ca_insen=PU(26.9=34.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATATTCGTGTGGGCTGGGAG
R:
CTCATGATGCGGGCAAACTCT
Band lengths:
176-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]