GgaINT0058209 @ galGal3
Intron Retention
Gene
ENSGALG00000005716 | SBF2
Description
NA
Coordinates
chr5:10155167-10157983:+
Coord C1 exon
chr5:10155167-10155343
Coord A exon
chr5:10155344-10157881
Coord C2 exon
chr5:10157882-10157983
Length
2538 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CAATTTGTCATATTCTGTAGCTT
3' ss Score
6.32
Exon sequences
Seq C1 exon
GGCTTCAAACTTGATTTTGCTTTGAATTGTGAATTTGTTCCTGTTGAATTCAGTGACATCCGACAGACAAAGGCAAGCTTTAAAAAGCTGTTGAGAGCTTGTGTTCCCAGCACTATTCCTACAGACTCTGAGGCAACATTCTTGAAAGCTCTTGGGGAGTCAGAGTGGTTCCCGCAG
Seq A exon
GTAATTTATATGACTGGTACTTCTAATAATCTTCATGCAGTACTGCTTGCACCAAATAAATTTAAGACTCTCCTGACAGAGAACTATTGTATTTTAACCAGCTGTTCTTTGCTCTTTGTGATTACTTTGCATGCTATCAATTCTGTCATTTCATAGGTGTTATTATCTTAATGCTACCACAACATCTACAGATGTGGGAGGTAATCTTATAGCATTGTTTGCATAGACTGTCTCTCTAGATGGAACATATACACAAATGGAAATGGTCATTTTTATTGCATGTATCAATTTATGGTCTTGATTTTAACAGTTTTTTTCTTATTCTATATATTAAAAAAATATAGGACAATAGATGGGCCTTTGATTTTAAAGCTGATATTCTACCCTTAATATATGTTCCTACTGTGAATTTCCACATGCTCTGCTGCATAAATGATCCTCAACAGTAAATAATCCTCGAAAACAGAATAGACAGAATACATGCAGGTAATTTAGTGATTTCAGTAATTATGCATCATAATGGACAGAAGGATTGAGTATGCTACATTGCTAGGAGTGGCTTAACTCTTTGCGTGTAAGGTATGATCTTTCCTTACAGAACATAGGAGCTGGTCATTGAAATGTCTGACCGCTGCTTTGTCAATGAAAGGGAGAAGTCTGGAGACATTATGGTCTTGATGGCCCCACCATGTGAAAGTTTCCAGTCACAGAGCAATTGAGCAAGTTAATAGGTGTAGATAAAATAAATGAATATCATTATGATAAATAAACACATCACTATAGCAGCACAGAGATGAAGAAGAGGTTATCATGTTGGAGTTACTGTCAAGTGTATTTGAGAGGAAAATAACAGCGTAACTCTTTGCTCAAGAGTGGATTGTAGTATCATGTACTAACTCTGATTCATTACCACGACATTTCTGTGGTGAAAATTCTGGGGTAGGTGACTTATGCAATAAAGTGGATTTATGGCTGATTTTTCACATTTTCTGCTAGTCCTGTGAAAGGACATAGATCTGTCATCTGGAAACTTCTTTTTATTGTATTAATCTTTCCTCTCTAGGTAACAGGAGTTGTACCATATTGGTTTTAACACTGTGTAGGCTAAATAGTTCTTTATGAAGATTTGAATATGGAAGCAATTCAAAGTACATTCTGAGTACTACTAATAAAAAATAGTATGTTTCCCTTTCTTTACATTGAATCTATGTAACCAGATTTCATATCAACTTCTTTCCTTAAGGACAGCAAAAAAATAGTCTTTCTTCTAGTCTGTTGCCTACGAAAGCATAGAACAATAAATGAACTGTTTGATTTTCAGTGAAATGATTTTCAGTCTCTTCCTATTAAAAATCACAAGAAAATAATTCACTTTTACTTTCTAGTAATGACTGTGTGAATGTTTAGGGTTAAGTGTTTTCTGTTAAGTTTTCATGGTAATATTAATAGGATTGAGTTGTTGTTTTTTTTTTTTTACAAGGTAAAAATCCATCCTACTTCTAGGGTTTCTTTGCTATTGTTTCATTGATCTTTTTTCTTATTTTCTCCAACTTAATACTGTCCTCCCTGAGTTTCCTTGAAGTGAACTTACTTTTTTCCATGCATAAATGGTCTTAGATGTCTCTTGCCATTTTTGCTTTCTCTCTTTCCTTAGGCTTTCATATTTTCTATGTTGCTATTGGATTGTATTCAATGCACTGGAAAGAGCAGTTTGATTCTATTATAATAAAGGAAAAAAAAAAAAACCTGCTTACATATAGGATATTATGTTACTTACCAAGAATGCATTTGAAGTATGAAAGATATGGTAGAAATACTGTAGGTTCTCACTTCAGTAGTAATGATGTGAACTCTCCTCTGTAAGGTAAAAATGTTCAAATTCACTTAGTTATTTCAATTTGCTTATAAACACTATGTTTTAAATCTCATTCAAGTATATAACCTTTCCCAGAGAAATTACTAACTCATCTGCTCATGGAATTTTAATATCACTACGTAGCAGCAGTTATCAGAATGCAAATAATGAACCTGTCCTCTTTTTACATGATTTAGCCAGTCTGCCCAAAAACAGAGTGTGAGAAAAAAGGTTTAATCCATCTAAAACTGTTTCCAGATAATAGAACATTCTTGCTTCTCTTTTTGCATTAATTTCCAACTTCCATGAGACTGAACATTAGAAATATTTTCTTCTGAGTATCTTACATTGGTTCTCCCATGAAAGTATTGAGTGACTTTGTGACCGTAACTTTTCACAGGAAAAGATTGTAGTGTTAATCCCAGAGTGGAATTTCTCTACCATAAATCTATCAACTGAGTTGTTGCCATGCTCCTTTTTATGACAACTATTTATTGCAGTACTCACTGATTTTAATAGTTTAAGTTCCTATCTCAAATATTTGCATGGTGTCTGAGAGTGTCTTTTAGTTTTCTGATCTGTTTTATCAAACTCATAATATGAGTTAAATATTATATAAGAAGAGATTGCATTTACTGATAATATGACATTTCACTTATACTTCAATTTGTCATATTCTGTAG
Seq C2 exon
CTTCACAGGATAATGCAGTTGGGTGTGATCATCTCTGAGCTCCTAGAGAATGGTTCTTCTGTTATGGTCTGCTTGGAAGATGGCTGGGATATTACTGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716:ENSGALT00000009170:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(13.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]