HsaINT1040905 @ hg38
Intron Retention
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr11:9808901-9812708:-
Coord C1 exon
chr11:9812532-9812708
Coord A exon
chr11:9809003-9812531
Coord C2 exon
chr11:9808901-9809002
Length
3529 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTCTCCTTCCTGTCTCTTAGCTT
3' ss Score
8.78
Exon sequences
Seq C1 exon
AACTTCAAGGTAGAATTTGCTTTAAATTGTGAGTTTGTTCCTGTTGAATTTCATGAAATCCGGCAAGTGAAAGCCAGTTTTAAGAAGCTGATGAGGGCTTGTATCCCAAGCACCATCCCTACTGACTCAGAAGTGACCTTCCTGAAAGCGCTGGGAGATTCTGAGTGGTTCCCACAG
Seq A exon
GTAATGTCTGAAGCAGCTTCTTTCTTTATAACTCAAAGAAACAGAGGCCCAAGTAGATATACAGAACTGTATTTGAGAAAAAAAATACTTTGTTCCCCTACTCCCCAACATTCTCCTCCTTCATTGTGTGCCATCAGTAAAGGCCTTTCAGACTAAGGAAATCATCTGGTATAGGAGGTGAGGGAGTAGAAGTCTTGATCGCTGGGTTTTTATCTCTGTGTATTTAAAAGTTTGGTATCTATAGGACACTAAGGAGAAAATTATTTTTAGATGGAAATCTTTGATGTAAATTTAATCAGCATGTATTTACAGGGCTCCTGCTCTGTTGTCAATACAGTAAGGATCCAGGGCAGAGGGCAACTTCTGCATGACTCCCAAGAGCTCTCACCTTTCATTTGTCTGCCTATCCCAGGTCTCTAGATTTTAGATCCACCCCACACTACCCACCAAAGGCACACTGGATGCCCCCAAGCCTACCTAAGGCTTGAAAAAAAAACACAGTGTCTATCATCTTTCAGTTCAGTCAACTTTGGGATATTCTTAATTGAACTTTTATTGAGAAATTAAAGGGCCTTGTCTTTAAGCCCCTTTATTTCTTATATTGCCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTAATCCTCCCACCTTGACCTCCCAAAGAGCTGTGATTACAGGCATGAGCTGCCACGCCTGGCCCCCATTATTTGTTATCACCTTGCAGAAATTCCCAGTCCCCTGCCTCCATCTACCTCCAAGCATCCTGCCTCTTGTTTCCCACAGCACATTGGACTAAAAGGCAAAAAAAAAAAAAGGAAATGATGTCAGTACTCAGGGCTGTGACTGTTCTCAAGATACTTAAACCAAAGAGAAATGCCGCCACATAAATATTTGGCTATAAATGTATCATGCTGTGTTCATTATTATTAAGGCAATTTAGGGTGCTTTGCATACCCGTGGAAGGAACTGGTCGATACTCCCTTCTGTCCCCAGGCTATGAGCCCCAGCTCCAAACGGACCCCTCCACCCAACTTATCTATCCATGTTTCTGATACATTCTGTGCTCTACTCTTTGCTAGAAAGTGGACCTGTACCAAAAGATAGGGACTAAAGACAGTGGAAAATAATTGCCCACTTGGGATATTGACATCTTAAAAGTTAACTCTTAAAGCAAATTCTTTTTTTAACTTTTATTTTGTGTTCAGGGGTACATATGTAGGTTTGTTGTATAGGTACATTGCATATCTTGGGAGTTTGGTGTACAGATTATTTCATCACCCAGGTAATAAGCATAGTACCTGATAGGTAGTTTTTCTATCCTCACCCTCCTCTCACCTCCAACCTCAAATACGCCCCAGGCGTCTATTCCTTTCTTTGTGTCCATGTGTACTCAATGTTTAGCTCCCACTTATAAGTGAGAATATGCAGTATTTGGTTTTCCATTCCTGTGTTAGTTTGCTTCAGCTGTGTTACTGCAAAGGACATAAGCTCATTCTTTTTATGGCTGTGTAGTATTCCATGGTGTATATGTACCATATTTTCTTTATCCAGTCTACCGTTGATGGGCATATAGGTTGACTCCATGTCTTTGCTATTGTGAATAGTACAGCACTGAACATGTGTGTGCATGTGACTTTATGGTAGAACAATTTATATTCCTTTGGGTATATACTCAGTAATGGGATTGCTAGGTCAAATGGTAATTCTGTTTTAAGTTATTTGAGAAATCACCAAACTACTTTCTACAATGGCTGAACTAATTTACATTCCCACCAGAAATGTATATACATTCCCTTTTCTCCACAGGCTCGCCAGCATCTGTTATTTTTTGACTTTTTAATAATAGCCATTTCTTAGAACAAATTCTGAGCCCAAAAGAATTCAGGCCTGGTGATAGCTATGTTGTAGAAACAGTTACATGAGGAGCTTCTCATTACTGAGTAGGGCATTTGCCTTATTCCTGTGTTTAAAGTAGCCTAGCTCTGTTTAAGAGATGGGTTTTTTCATTTTTGTTCTTGTTCAGAGTTGGATTCAAATTGCAAATTATGTCTGATGATCATTAAAATATTTTTTAAAATTACAATGTTATACATCTGGTTTTAAAATCTATATACTATTCTCATACCTTAATTGTTTATTAAGGACTTTGAGCCAATTGATGTGGCTTTAAAAACTTAGCACAAATATATTGAAAGTTTTTTTCTCATTTAGTACACAGTATAGACAAATAGGAGTATCTTTTTTATTTTTATTTTTCGAGACAGGGTCTTGCTCTGTCACCCAGGCTAGAGTGCAGTGGCACAATCACAGCTCACTGCAGCCTCGATCTCCCAGGTTCAAGCGATCCTCCTACCTCAGCCTCCTGAGTAGCTGGGATTACAGGCAGATGCCACCACGCCTGGCTGGTTTTTGTATGTTTTGTAGAGATGGGGTTTTGCCATGTTGCCCAGGTGGTCTCAAACTCCTGAGCTCAAGCACTACTCCTGCTTCAACCTCCCAAAGTGCTGGGATTACAGGCGTTGAGCCACCACACCCAGCCAGGAGTTTCTTTTTTAACATATAATTCACTTACCATAAAATTTATCCTTATGATAAAGGTGCACAACTCAACGCTTTTTGGTATGTCCACAACATTGTGTAACTATCACCACTATCTAATTCCCAAAAAATTAAGAATACCTGAAATAGGCCAGGCGTGGTGGTTCACGCCTGTAATGCTAGCACTTTGGGAGGCTGAGGCAGGTGGATTACCTGAGGTCAGGAGTTCAAGACTAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCACTGGTATGCACCTGTAATCCAAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGGGGCAGAGGTTGTGGTTAGCCAGGATTGCATCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAATGTCTGAAACAAAACTTACTACATCATGGAAAAACAAATTTTAAATCCAATAAAATTCATCTGAATTTCCGTCTTTTGTTGGGAAGTCCACATAGAATCTCTGTTTTTTGTACTCTATGGAATTATAGCTCACCTACTTTTGGGGGAATCATGTAAGGTAATTTTATTTCATTATGTATTACTAGAATGTATTGTTTTAAAATGTGTCTACTTTTTTGAAGTGTCATTTTGTTGTTGTTTTCATTGAGATGGGGTCTTACTATGTTGCCCAGGCTGGTCTCGAACTCCGAACCTCAAATGACCTGCCCGGCTCGGCCTCCCAAAGTGCTGGGATTATGGGCATGAGTCATTGCATCCAGTCAAAAGTGTCATTGTTTAATCTTGATTTGAAAGAACTTTAGGTATTTAAAACATTATGTGGTTCTTTTGTGCAAGCGCTTTATCCCTAAGTCGTTTGATTATCCAGGGTTGAAAGCAACTCTCTCTGACTTCTGCACTCAGAAAGCGCTTGGTCTAATTGTGTTCTCCTTCCTGTCTCTTAG
Seq C2 exon
CTTCACAGGATAATGCAGCTGGCTGTGGTTGTATCAGAAGTACTTGAGAATGGTTCCTCAGTTTTGGTCTGTTTGGAGGAAGGCTGGGACATCACTGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812:ENST00000256190:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(13.4=100)
A:
NA
C2:
PF066029=Myotub-related=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains