RnoINT0130935 @ rn6
Intron Retention
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174971340-174976220:-
Coord C1 exon
chr1:174976044-174976220
Coord A exon
chr1:174971442-174976043
Coord C2 exon
chr1:174971340-174971441
Length
4602 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
AGCCTTCGTTTCTCTCTTAGCTT
3' ss Score
7.04
Exon sequences
Seq C1 exon
AGCTCAAAGGTAGAATTTGCTTTCAACTGTGAATTTGTTCCTGTTGAGTTCCATGAAATCCGACAAGTGAAAGCCAGTTTTAAGAAGCTGATGAGGGCTTGTATCCCAAGCACCATCCCTACAGACTCGGAAGTGACGTTCCTGAAGGCCCTGGAAGATTCTGAGTGGTTCCCACAG
Seq A exon
GTAACGTCAGGGAAAGCTTGTTGTGTAACTCAGAGAACATCCAAGTGGATACCACACCTGAAAAGCCTGTGTTTTTCCCTCTCTCCCTCGTTCTTCTTCATCATGTAACCTCTGTAAAGACCTCTCAGTTCTAAGAAACAGTAGGGCCTATGTGTAAGGAGGGAAATTCTTGATTACCTGGGGTTTTCTAAAATAAGAGAATGTGGCATGTCAGTGTAGAAAAGTGTAGAAATTTTTTTGATGCTGAGGAAAGTCAGTCATGTGTCTTCATAGACCTGCTGTGCTGTTGTCAGGTCCACAAGGGTCCAGCACAGAAGGTGACCTCTGCCTGGCTGCACACACCTTTCCCCAACTCTCTCAACTCCTCCCCTTTTCTCATGTCTGCCTTTTCTGTGTCTCTAGATTTTAGATCCACCCACACACTAGCCATCAGAGACTAAATATTCCAAACCTACCTCAGGTCTAGGAAAACTAGATATCCATCATCATTTGGACAAATATCATCTAGTTGAACTTTTATTGAAAAATTAAGTGAAATGTGGTTTGCTGACACATATATGCCTACATTTCTTCCAAGCTACAGAAGGGTATGTATGACTTGCACATTGTAAACAGTGATGCCAGTTTGGCAGAGTAACCTGCTGTGTCTATGCTCATATTCCCTTGCACACAGTGGGAAACCTCTAGTTCCTCTGATGCCTAGTTTCAGTTTTTCCCCAAGCACCCTGCCTACCTGATCCTCCCAGTGCTGGAGATCAAACCCAGGGCTCCATGCACACTAACAGACATTTGTCTCTAAGTTACAACTTTAGTTCCCCCAACTCCCCACCTAGTCCTGCTCTGTCAAGGAAGAGTTATTTCTCATAGTCAGTGGAGTAAATGGTAGACACCAGGAAGTGTGTCTCACCCAGGGCAGTGAGTATTATCAAGGCACTTAAACTATAGAGAAACATGTCCACATGTGCACTGATTATAAACATCTACTGGGATGTTCACTACCCTAAGGCAGTTCAGGACACTCTTAAGTGCCCGTGGAAGAAGTGCACTGGTGCTTCGCTCTGTCCCCAGTGCCAAACTGTTCTTAACACCCAACTCCCATAGACATTTCTGATACATTCTGTTCCTTCCTAGAAAATGGTCCTGGGCCAGAAATTAAATACTGCTATTTTACTTGTGTTAGCAGTACACTCCCCTCCCCCCCCCCCCGAACACGCAGTCTGTGTGGGAAGAAAGAGATGAGGACCCTTCTCTATCTTTTGCTCCTGTCTTTAAAGTAGTCTAGGTCTGTTTGAAATGTGGGATTTTTCATCAAAGATGGGTTTTTACTACATATTATGTCATATCCTGCTCAAAGTGCTTTTTAAAACTCAAATTTGGAACATTTGGTTTTGAAATCTATACTGTTTATACTCCCTAACTACTTATTCAGTGTGGATTTTTGAGTCAGTGGCCTGGAGTTTGAAGTTAAACTGAGGCACCAGGTATGGTAGTGGATGCCTTTAATCCCAGTACTTGGGAGACAGGGGCAGGCAGATCTCTGAGTTCAAGGCCACCCAGGGATGCACAGAGAAACTTTATCTTGGAAAACCAAAAAAAGGAAAGAGGGAGGAAGAAGGAGGAGGAAGAGGAAAAGTAGAAGTAGCTGTAGTATTGGTGGTGGTGGTGGCGGCGGCGGCAGCGGCCATGGTGGTAGAGGTTGTTAAGCTGGGGAGATAGCTCAGCCATTAAAGGCCAGACTCACAACCAAGCTGAGCACAAACAAGTCTCTTCCTGTGCAGTACACAATATAAACAGTGTCTTTTTAACATAATTGACTTAACTTAAAATCCATCTTTTTAAAAGTGTAAGTGCAGTGTTTATAGCATATTCCCAGTGTTACACAACCATCACACTAGTGCGAGGGAACGTTGAGTCTGTGAAACAGAAATTATTGTCATGAAAAAACAAACCCAAAGTTCTGTAACGAATTAGAACTTCTGTCTTTCCCACTCCGTAACATTTTAGTTTTTCCACTTCAAGGAATTTGTACAAGGCCATTTCATTATATCTCATTTAATACCTTAGATTTTTGTTTATTAGCATTTATTATACCTAATTTAGCATTCATATGTAAATATGGTATATTTTTATCACATTCACACTTTATTACTCTCATTGTTTCTCTCCTACCTTGCCGATTCCTTCCCTCTTCCCTTCTGTGAGCCCCTTCTATTGTCATGGTTTGGTGTTGCCTTTGGTAATCCAGTGCATCTCATTAGGGTTGCATGGTAAGGGCTTATTTACAGGGCCATGGGAACCTTACCAAACTACTCCACTGAAGAAAATGTCTCTTCTTTCCCCCATCCCCCAATCCCGGTCACCCATTAATCACCTACAGCAATTCCTCCCCCTGGGGTAATATATTGATAGGCCCAGTCATATGCAGGTCTTCTATAGGTAAGCACAGCTGCTGTGAATTCCCAAGTACAGCAGCTGTGTCCTTTCCAGAAGACAGGATTCCATAACATCCGTTTCTTCTGTCAGGAGCGTACATTCTTTCTGTGCCCACTTCCATGATGTTCTCACTGCCTTGGAGGTATGATATAGATGTTTCATTTAGGACTGAGCATGCCACAGTCAGTTATTTTCATCCCGTTTGCTAGTTAAGTCCCAAAAGTTAACACCACCAACTAGAAAAAGAAGCTTGCTGACCAAGACTGACAGCAACACTGACCTGTGGGCATGAGCATAATAGTTTAGAAAGCAGTTTAACAGATATATCATGGCTACTTAGAAAAACAATGGTAGTAGCCTTCCCACTAGGACATAGGACCTCTCCAGTCATGGGTGTGACTTGCCCAGGTTTGCAGTACCAGCCATGAATTCCCTTCTGTGGAGCAGGCCTCAAATCCAGTCAGGGGCAGTTGCTTACCACTCGAATGGAATCGCCACTACTGTACCAAGGGCATGCATATCTTGCCTGTACAGTTGGTAGTGTTACACACAGGAACGACAAGTGACTAAGACTGTAAAGGGTAACACTCCCAACCCGCATAACATCTTCAAGTCCTGTGAGTGCCAGCCAGGAGGAGAGAAGTTCCCACTCAGGTTCTGCTTGATTTCTCAGCGTTCTATAACCACTGGATTATCTTTAAATATATCTGCTGGGCTGGAGAAATGGCTTAGTAGTTTCAAGCATGTCCTATTCTTTCAGAGGACCCTAGCACTCCCTTTGCATGATTTACAGCTGCCCATGAATCCAACTCCAGGAGATCTGACACCTTCATCCTGCAAAGATACCTGCATGCGAGTGGCACACACACACACACACAACACATAATGTATTTTTAAATAATAAAATAATCTTTTGCAAATAAAGAGTTATAGAGATGGCAGTTAAGAATTCTCAGGACACTTATAGAGGCCCCACATGGTCTTACAGAATTTGTGAGACTTTTAATGCTATCAGAAGCAAACTAGCTAATGTATTAAAATATGTAAGTCTGAATCATTCAGAACATGAGAAGGTTATAAGGATATCATTGTCAAGCTGTTCCTTGAGAAGTGGTAATGTTTGAGGAAGATAGGAGCCATTAATAATACAAAGAAGCTTCGTTTAGTCAGTGGTCATAGCTCATGATGCAGAGTAAACAAAATAATAGAGAAGCAACAATATGGGGCTGGAGAGATACTTCAGTGGCTAAAATCACTGGCTGTTCTTTCAGAGGACCTGAGTTCAAATCCCAGCACCCACATGACAGCTAAAAACCATCTATAATTCCAGTTCCAAAGAATCCCAACAGCCTCTTCTGGCTTCCACAGGCATAAATCAGAAAAATATACCCTCACACATAAAATAAAATTAAATAATAAAAAAGAAAGATGTGCTCAGCGGCCTCCCCAGCCTCGGCTCTTACTTAGGACTGACTGAAACATGAGAATTTGGACTCTGACCCTGGCTTCATAACTTCAATTATTATTTCCATCTATCAGTTATTTGAAAAGCAGTTAGGGTTGGGGATTTAGCTCAGTGGTTGAGCGCTTGCCTAGGAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAGCAGTTAGAGGAATTCTCATCCCTTTGGTGCCCATGAAGTAGATTCATTGATGCTAAGAAATGAGAAATATACTACCATATTGGTCTTACATCTCCACTCCCCTGAAAAATGTAAACCAGAAACTACCATTTTACCTTGGGAAGTGTGCTGTTTGTAAGATTTTAAAGTCCTTTGAAAAAACAGCAAAAGTGTTATAGCTGACACTGTAAATCTAAAATTATTTTGAGGAAGCCAACGAATAGAGGCTCTTATGAACAGGCCTAGTGACCTCAATTTAGCAGATCCTGCAAAGTAAAAGAACTGGCTCTCAAAACTTGCCCTCTGACCTCTACACATGCCCAGAGCACACATGCCTGCACTTACACACATACACCATAAAGTAAATAGGTGAATGAGTGAGTCTCACCCCCATTTATACTATGAGAAATGTAATAAGTCTAAAAAGTAAAATTCCCAAAGACACAGTGCTTCCTCTAATTGTAGCCTTCGTTTCTCTCTTAG
Seq C2 exon
CTTCACAGGATAATGCAGCTGGCTGTGGTTGTGTCAGAAGTACTTGAGAACGGGTCTTCAGTTTGGGTGTGTTTAGAAGAAGGCTGGGATATCACTACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812:ENSRNOT00000013126:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.7=100)
A:
NA
C2:
PF066029=Myotub-related=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]