GgaINT0058381 @ galGal3
Intron Retention
Gene
ENSGALG00000005927 | ST5
Description
NA
Coordinates
chr5:10679858-10682544:+
Coord C1 exon
chr5:10679858-10679998
Coord A exon
chr5:10679999-10682395
Coord C2 exon
chr5:10682396-10682544
Length
2397 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TACTTGTTGAACGTGTTCAGGTC
3' ss Score
5.43
Exon sequences
Seq C1 exon
ATCCTGGATGAAGTTGAGAGGAGAAGGGGCATATCTGCTGCTTTGGTTTATCCATTTATGAGGAGTTTGATGGAATCTCCTTTTCCTGCACCTGGAAAGACAATCAAAGTCAAAACCTTTCTGCCTGGAGCTGGCAACGAG
Seq A exon
GTAAAAAAATAACAGGAAACATTAAGAACCAAAGCCTTCACCCTCATCGTGCCTATAGCAAACACCAAAAGTAAAACAGGAGGTACAGATAGTGCAAGTCATATGGGATGGTACTTAAAATGAGACGTGCAGGAGCTGCTACAGTGTTGATATGTTAATGCTAGTTCCTGCTGATTATTATACACCAATTTATGGATATGTATTTGTTATTTCATAACTTTTAATACGTTGCCTTGTTGTTGCAAACATCATTAATTTTTTTTAAACTGTCTCAAGTCGGTAGAAACCTAGCATTATAAAACATAGACCTTATGGAAAATGGCACTGCTGGTGCTTTGCTTAAAGTTTCTTTTAACTTGAGGCTTACTAGATATTTGGCATGTCCTTCCATACTCTACGTGTCCTGATGTTACTATGCAGTAGCTCCATTCAGGTGAGCAACTGTAGAGGGTAATTATTCACTGCAGGTGGGAAGAGAATTTGTCCCGCTTAGCAAAAGCAAGAAAATTCTTTTATGGTTATTTTACAACTCCTAGGGTTAGCTCTACAGTGCTATTTCTTACATCGAACCGTATCTTCTCCAAGTGTAATGGAGTAGACCTATAATGTCACTTGGGATGAAATGCGAGGGGTGCCTTGTAGAAGTGACTTGCTGAGCATTTGTAAGTCACATGCATTTTCTTCTGGATAAGCAAAGGAAAATGGAGAGGCTGCTTGGCATAGCAGCAGTGAGATCTGATAATGCCTTTGTGATGCGAATGTATCTGGGAACTGTGATGACCAACTTCTCTGTCCTCTGCTCAAGCATCTGAACTCACCCGGAGAATAATATTGAGATGATTTCAAACAAACAAACAACTCTTCTGGCTGAGCTTTACACTGTGTTATGCTAGTACAAACTCGTTATTTAAATGGAATGCGCTGTCTTAATTAGGAACAGAATCTTGTCCTTCCATTGTGGCTCCTCTGGCCTAAACAAAGATGATGATTAATTGGGAAGTAGACAGTATATTTCTTTGTGAAGAGCAGACTGAAGCAGAAGGCTTTGCCAAATAACAGAAAACATCTATGGCATCTAAAGCTGCTGCAACTTGCATTGCATCCTACACCCCAGCGAGATATTAGTGTTGGAAGTTTTGCAGCAAAATTAGCTCCTCGTGATTGGGCACTTAAATATGGTTTGATTCCAGCCCCAGCGCTAAGGAATGGGAGTGGGCCTCTCAAACACAAACAGTATTACAACTTAACTGGCAGGAACTCGTTTTGTGTTTGGTATCCTGTGGTCTTGCTGCTGTTCATATCCTGAAACAGTGTGTCTGTGAGGAATTTCGTGAGGGCTACTCAACTTTAAGCCCAATACAGTGGAATGCGGTCTCATGCGCATGAAAACATAAAGGAGTTTTAAATCATTAACATGATGGTGGTTTTTGGACATATGGAAAGAAGGAGATGTATATGTGCTCCTGTTGATACGTCTACAAAGATTTCAACACAGCTTTTAGTTGGTCAGCTTTTCCCTTTTCCTTTCTGTTTCCTCAGTTTCCTCAGTAGTTCATCATTTTCTGTCTCACACTTCATATTTTTATTCCTCTCTTACTCTCTTCTTCATTATATTTTTCTATCTCTTTTCTGTCCTCTGCCTACAAGTTCCACAACTGAGCATGTCAATTGCAGAATAAAAGGAAGATGTAATAAAGGAATCAAGCAAAATGCATTTGAGAAAAGGAAGGAGAGGGCCCGAGGTCATGGATGAAGTCTGACAATTAGACTTCAAAGGGATGTCACAAGTCACCATCTAAGACCTTGTCCTGACTCCCAGTTAAGTATGTATGTATATATATACATATACATATACAGGTATGTACATGTGTTTATGACAACAACAAAAGGATTAAGCACCAGCTAGTGACTTGTGTGTTAGAAAGGAGGAAAAATGAAGTAAATTGGGATTAAACTTTGCACGATGCACGAAGTTCAGTCCCTGGCTCCCATCTAGATGTGAATTTGAATTGCAAGCCAAATTGATACCAAATATACTTGGTCTTTATGACTGTTTAACCCTGCAAGCTTCCAGTTCTTGTTTTTTCAATTTGTTACTTCATTCTGTCAACTGAGCCAAGCTTTACATTTCTGAGAGAGTGCTTAGAAGGCAGAATTACACTTCCCTAGGAAATGATAGCAGATTTAATGCATGTCTATATTCTGGGAAGAACGTGACGTGACAGTGGACTTGTGTAGTGCACTGTTTCTCTGGAGATGTGTGCCTCAGTTTCCAAAAGGGATGGGGTTTGCTCTTCTTGTCCCCTCAGCAGGCATGCCTGGGCCAGGGTGCTGCGTGCCCCTGGGGCTGTCAGACCTGACCAGTGACACTGACTGATACTTGTTGAACGTGTTCAG
Seq C2 exon
GTCATTGAGCTGCGGCGGCCCATGGACTCACGTCTGGAACACGTGGACTTCGAATGCCTTTTCAAGTGCCTCAGTGTGCGTCAGATCATCAGGATCTTCGCTTCTCTCCTCTTGGAGCGGCGCGTGATTTTTGTAGCAGACAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927:ENSGALT00000009535:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(24.9=100)
A:
NA
C2:
PF0214116=DENN=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]