MmuINT0153200 @ mm10
Intron Retention
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:109531082-109534774:-
Coord C1 exon
chr7:109534634-109534774
Coord A exon
chr7:109531231-109534633
Coord C2 exon
chr7:109531082-109531230
Length
3403 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTGCCTTTACTTCCCTCCAGGTG
3' ss Score
12.09
Exon sequences
Seq C1 exon
GTCCTAGATGAGGTGGAGCGCCGGCGTGGGATCTCAGCTGCACTGGTCTACCCCTTCATGAGAAGTCTCATGGAATCGCCCTTTCCAGCCCCAGGGAAAACCATCAAAGTGAAGACATTTCTTCCCGGCGCTGGCAATGAG
Seq A exon
GTAGGCAATTGCTGCAGCTTTCTTTTCTGGCCTTGGGCTGGGTCTAGAGAAGAGCCTGGCCAGCCCGAGTGCAGTCTCTGAGGGGGTAGAGCACAGCGCTTCCTCACTCACTGTGTCTGTACTCCTAGTCAGTAAGAACAAACATGTGAACCCAGGGGCAAGTGTTGCCCAGTTATCTTCTGCTAGGACTTCAGTTGACTTGGACCCTGGATTAATATTGATTATGGGCATTCACAACTGGAGATTATACCAAACTTCAGATACAGTCATGAGGATAAAGAGCGACACAGCTCTGTCCTCCAGGACATTTTTTTCTAGAAGGGGACCTGCTGTTGAATAGTTATATTTATAAATAGTCAATTCCTAAGTGTCTGTAAAAAGAAAGAACGGATCCTATGAGAATGTAGAACAGGAAATCTGTTTTAGTTTAGGGGGCCAGAGAAGACCTTCCCCCAAGAAAGTGCCATTTTTCCAGGGGCCTCAGCAATGCACAGGAGGTGGAGGTGGAGGAAGATGATGCAAGTGTGAGAACAGCAGGTGCAGGGCAGGAGCCAGAGCGGAGCAGGTGCCGCTTAAGCACTTGAGACAGGGTGCAGAGGCCCAGAGGGTGTGAGGAGACGTAGGTGGGCAGGCAGGGGCCCAAGCCCATTGTTTGTGCCTGCACACATTGAATCTGGGGGTTTATCCAAAAGATGATTAAGATTCACTCTGATGTGTCTGCCTGCTGTGCAGAGAATGGGCAGGAGTGAAAACAGTGAGGCAGCTAGAATACAATTGCAGTAACACAGGCAAGAGGTAAGTCTGGGCTAGAGTATGGTAGGGAAAATGAAGAGAAAGACGGATTTGAAGCAGTAACACTTGGAGTTTTCCTGGAAAACATGAAAGCATGACAGTGGTTCTTAAGTCCAACCTCCAACTTTCTGTCCGAAGGAACAGGGTGGGTAATAGTGCCATATCTTAATGTGAGAACTTATGAAGGACAAGAAGGAGAGTTCTGTCTTATGATTTAAGTTTGAGGTACCCATGAGACAATAGTAACAAAGTATATAGATAGGGATGAAATGAAAGCCCAGTTTTGAGAAAACCCCAAGTAGAGGCCCCGTGATAGAGAGGTAGCAACTCTGAAGCTGGAAAATAGGAAATAAGGAGAGGAAGTGGCTGAGAAGCCAAAGAAAGGGAGCCATAAGGAATAAGGAGTAATGTACCAGGCAGGTACCACAGAGGTGCAGCAAGGCGCACTGACAAAGAACAGACTCCAGATGGAGCCTGGGGTGCCTGGGGGAGTGGAGAAGTAACGGTTTCAGACAACTCAGGTAGACAGCTCTTCTGGGGCGTGGCTTTGAGGAGAACAAGGAGGTGGGTGGAAGGAGAAAGTAAGTGGAGCTGAGGGCGGGGGCCAGAGTGAGAGGGGTAGGAAGGTGTTATAGAAGATGGCTGTTTGCATGCTGCTGGAATTGGCCCTGGGTGAAGACATTAGCAATGCAGAAGAAGGAAGGACACCAACTGTCACCAGAAGCAGCCAACTGTCACCAGAAGGTGCAGGCAGGGGTCTTCATGGAGGCCTTCTTCTGTTAGGAGAGGAAGGGGAAGATGGTGGCTTATAGACTTGGATTCTTAGGAGCTGGCTGAGTGTAGAGAAGGGGGCGTCTCAGAGTAAGAGGTGGGAAGATGAAAACAGCTGCCACAGAGTGGGAGGACCAACCTCAGAGTCGTAGAGCTGTGCAGGCAGTGACACATGCCTGTTGGCATCTCCCTGAGAGTCTCTACATATCCTGGGATTAGCGAGACTTGGAGTTTGATGATTGGCAGGATAGCTGACCCTGCCTTGACAGCTGGAGTTCTTCAGTTCCTACTTCTCCTAGGTCACCTCCTGGGCCTGGCTGCTTCTCTCTGACCAGGGCTACTTTCTATCCCATGAGTCTTCTTGGTTTTGCTTTAAAGACATTTCCTTCTCACAGAATCCAATTCACTCATACTGTAAGACACCTCAGACTCTCAGAAACTGTCCAGAAGTGGGCAGGTGCCAGCTTCTCACCCTAGATGCAGCGCCTGCCTTCTCTGCAGATCTCACTATGCCCTTCTTTCCTACTGCTATCTGTGGGCTGTCCCACTATGCTGCTGTCAGATTCCCAGCCCCTGGAGGCAGGGGCAGCATGGGGCTGGGAGTTAGAGGCTGGAAGCTGAAGAGTAGCACTTATTAGGGCTGCTTGCAGGGCTCCCAGGAGGCAGGGCTACAGAGTTTTGTTTTGTCTTGTTTTAGGATGGGGACAGATATTGGGTAGGGTACAGGGTTCTGACTTGGCTGCTATGGCATGCCTTCAGCCTGTGCCCATCAAGCACTTAGGCTTTCCTCTTCATTGCTCTGATCTTCCTGGGCTTTACCACCTGTCAAGGAGGACGGCGCACACAGCTCCTGCAGCCCCCTTCATCCCTGTTGATGTTTTTCAGAACCCAGGGTGAATACTGAGCTAAGAATTCCTTCACTTGCAAAAGCAAACAGCGCTTAGGGGACTGGAAGTAACCCAAGTTAGAGATGAGAAATGAGGCTCTGTAAGTGGCTGGAGCAGATCTGAAGCAAGACCAGTTGAGACACCTGGTGCAAGCCCCTTGAGGGAGTTAGCTGACACCACAAGGCCACAGGGGATAGTTCTCAGGAAGCCTGCATATCACTGCTGCTCTACAGAAGACGATGAGTTAGCAATTCTTCTGTCACTGTGGGGGTCACTTGCAGCCCCCCCCCACACACACACACACCCATGCCTCCAGGGAAGGGGCTTTGGGAGCTGCTACATAGACCTCTGAGTAGTCCTTCGAGAATACAGGTAGGCCTGGCTTTAATAAAGGTAGTCCTATGTCCTTGCAAGATTCTTTGGAATAGCCAGACCTTTCCTATCCTTAGCACAGGGCTGGTGGTAGAGATAAGGGGCAGGATGGCAGGACAGCCGTCGGAAGGAAACTGTCATAGGAAATGGAGGGGACATGGCAACAAGGACAACAGCATTGTCTCTCCAGACATGGTAGAGGCCAGCACTCCTAAGTACTGGATTCTTCCTATGGTCTAGAAAGCAGTGGTCGATTGTGGGTCTGGTCAGTATGCTGAAGGAGATGGGAAAGAAGGCAGGAGACTCGTGCAAATGGGGTGTGTGACTCCCTGGTTCTTCATATCCATGGGAGCAGTTAGCTTTCTCTACTTTCCTCAGAGCTTATGTTTGGTCCCTAGTACTAGGCGTTTGCTAGGAGCAGAGCTAGAATCGGAAGGAAGGAGAGCCTGGGTCTCCTGCATCGTAAGAGGATTGGAAGCCTTGGAAGGAGAAGGCTGAAAGGAAGAGTAGCCAGCAGACACTGTGTGTGCAGCCTGGGCTCTCACCTAGCCTGCTTCTGCCCTGCCTTTACTTCCCTCCAG
Seq C2 exon
GTGTTAGAGCTGCGTCGGCCTATGGACTCCCGCCTGGAGCACGTGGACTTTGAGTGCCTCTTCACCTGCCTCAGTGTGCGTCAGCTTATCCGAATCTTTGCCTCATTGCTGTTGGAACGCAGAGTCATTTTTGTAGCAGATAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024:ENSMUST00000077909:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(24.9=100)
A:
NA
C2:
PF0214116=DENN=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types